- Transcript BART1_0-u59110.001
- Transcript IDBART1_0-u59110.001
- Gene IDBART1_0-u59110
Barley RTD
Exon Structure of BART1_0-u59110.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chrUn | 1 | 110453939 | 110453118 | - |
| chrUn | 2 | 110454143 | 110454053 | - |
| chrUn | 3 | 110455196 | 110454393 | - |
| chrUn | 4 | 110455512 | 110455273 | - |
| chrUn | 5 | 110455879 | 110455621 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 11.2043 | 4.97896 | 10.5659 |
| morex | ETI | 13.8498 | 12.3467 | 18.8995 |
| morex | LEA | 11.2346 | 4.7016 | 7.79006 |
| morex | EPI | 15.0412 | 26.193 | 16.4963 |
| morex | ROO | 7.27747 | 5.96318 | 2.69305 |
| morex | ROO2 | 29.6176 | 22.804 | 27.2282 |
| morex | NOD | 24.318 | 10.0343 | 26.1714 |
| morex | RAC | 34.0172 | 35.0253 | 39.9217 |
| morex | INF1 | 15.3241 | 20.805 | 20.5822 |
| morex | INF2 | 0 | 0.36211 | 0.129997 |
| morex | CAR5 | 0.000154237 | 3.11097 | 4.58252 |
| morex | CAR15 | 0 | 0.00000158575 | 0 |
| morex | LEM | 39.9785 | 37.9538 | 32.487 |
| morex | LOD | 101.507 | 81.3097 | 77.2943 |
| morex | PAL | 33.0838 | 26.0829 | 25.618 |
| morex | SEN | 18.151 | 11.3074 | 11.746 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06140.3 | +2 | 1e-124 | 389 | 284/562 (51%) | protein|no apical meristem protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g16480.1.p | +2 | 5e-151 | 460 | 323/629 (51%) | pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2216 bp)
>BART1_0-u59110.001 2216 150831_barley_pseudomolecules NNNNNNNNNTGGCTACTCTCCCACTCCATCTCGTTCTACTCCTGACAATATGGAAGCAAA CGAGGAAGCTATCACACTCATAAATAAGGAATCTCCTGAATCTGGTCTGCATGGATGTCC AATTGAGTTGCCATGTACAATTGAAACTCTGGGCGCCCCGGTTACAAGGTGGCTTGCAGA CCGAAATGGCAATCCCGGGACAGATGAAGCAAACGATGTAGGCATGCCTTTTCATCGTGG TGTCGATGAAAGTCCCAAGGCCGATCTGTCAGTTGGCTCTCTGGCTCACCTAATTGATTC ACAGACGAAAAATCTCGGTTCTCATGAGTTTGCCACCGTTTCTGCCCCCATGTTACCGGA TGACCATTTGGACAATCTTCTACTTCATTTAACTCATAATTCGGTGGAAGATTTCTTGAA TGAAACAATTGCTGATCCAGACGAGCTTTCGTCAACTGCATGTAAAGTTCAGTACGATTC AGACAATGGGATTATGCAGGCTCAGGGTGATTTGCTATATGATGATCCAAACTGGTTTGG TAATTTTCTGTCAGATGACACAAATCCACAACCAAGTGGATTATATGAGAATGCACCATT GCTTCCTTATGGCACTAATCCTGATGTACTTTCCATGGACTCCGGCGACGAGTCCTTGCA AGATTTGTTCAATAGCATGGACGATTCAAGTTGGCAGAATGATGTATGGAGCAACGGATT TGGATTTAATCCCATGCATCAGCAGTTACAGTCTACTGTGCATCCGAACTATATATTTTC TCAACAGGGCATTGCACGCAGGAGGCTTCGGCTACTAGATTCATTGTCTGATGTCAATGT TGAGAGTAGAGAGAGCATGACCAGAGATGAACATGAAGATGAAGAATCAGATATTGTAAC TTCGAAATATAGGAGTGAATCTGTTGAATCATCTGCAGATGTAGATGAGTCTGAGTCAAC CGGGGTTACTATTATGAGCCGGCGCCGTGCTCTAACTAAAAGTGTGCCTTCCGACCGCGA TGATGCTGAATCAACGGGGATTACTATTATGGGCCGGCGCTCTGCTCCAAGTTCAAATGC GCCTTCCGATGAAGCTGATGCTGAGGCAACAGGGATTAATATTGTGAGCCGACGCACTGC TCCAAGTTCAAGCACAGATAACTCATTTACCACCGAACAGGGGACTGCAGTGCGAAGGTT GCGGCTACAATCGAACCTTGACGCAGGATCATGTTCCAGTGTTGATGGTTTGTCAAGTTG CATTATAGAACATGGAAGTGAAAACGAAGGGCTGGAAGCTGAGATTGACGAGCATGTGGA TACAAACTTCCTTGATGATGTTGGTTTTGCTGGCAACAGTCATGCTGATGAGCATATGTA CATGCCTGATCATGAAGCTAATTCTCTTACGAGGCTGCGGAAGACAGCAGAGAAAAGCGA CAAGGAGAACAAGCAGGAGTGTGGTCCCCAGTCACATGTGAGAGCACCAAGGAAGAGGGG AGGCTTCGCAGCACGCATGATCTTGCCAGTTCTGTCGGTGGCTCTTCTCGTTCTTGTTAG CGTTGGGGTCTACGGATGGGCATAATAGCTCTCTTAAAATGGGATTTAATGTGTCACATT TTCCCCACATCGGCTGTGAGCATTGTACATACTGTGTCTTACTGCCCGCGTTTAGACGGT TGTAAGACAGAGAAGTGTTTGTTCCCCTTTCGGCGGGGAAGTGTAAGTGAGGTAGCAAAT GAGAAGCGGGATGAAGCAAGGAGCAAGTGTTGCTGTAGATGCCTGTGACTTGGTACATGC TAGTTTTCGTTTTTCTGTCACCGCAGGTGTTGGCAACCAGGTTGTAGTCATCCATTATGC GTGTTGTTGTGATGTTGTAAGGTCTGAACCTAATTAGATCTGTTGCAGATCCTTTTTCCC ATTTTGTGGAACTTTGCAGTCGCTTCATTTTTAGTGATGCAGTTGCTTCATTTTTAGTGA TTCATCTCCCAATTTTAAGCGGGGTGAAATACTACCTGAGCTCTCAGCAGTCAGCACCAG CACACATCTGGTAAAAAAGAAAACCGAGGTAAAGTAATTGCCGCCCTGCCGCCGCCGCAG CGAGAAAAAGAAGAGATGTGGACTTTTTCAGACTTTAATCTGAAACTATAGCATAAACTA AACTTTGTATGAAACTATTTCACGATGTGACCCTTTTAAAAATGTTAGAACCTGTG
Protein Sequence (527 aa)
>BART1_0-u59110.001 527 150831_barley_pseudomolecules XXXGYSPTPSRSTPDNMEANEEAITLINKESPESGLHGCPIELPCTIETLGAPVTRWLAD RNGNPGTDEANDVGMPFHRGVDESPKADLSVGSLAHLIDSQTKNLGSHEFATVSAPMLPD DHLDNLLLHLTHNSVEDFLNETIADPDELSSTACKVQYDSDNGIMQAQGDLLYDDPNWFG NFLSDDTNPQPSGLYENAPLLPYGTNPDVLSMDSGDESLQDLFNSMDDSSWQNDVWSNGF GFNPMHQQLQSTVHPNYIFSQQGIARRRLRLLDSLSDVNVESRESMTRDEHEDEESDIVT SKYRSESVESSADVDESESTGVTIMSRRRALTKSVPSDRDDAESTGITIMGRRSAPSSNA PSDEADAEATGINIVSRRTAPSSSTDNSFTTEQGTAVRRLRLQSNLDAGSCSSVDGLSSC IIEHGSENEGLEAEIDEHVDTNFLDDVGFAGNSHADEHMYMPDHEANSLTRLRKTAEKSD KENKQECGPQSHVRAPRKRGGFAARMILPVLSVALLVLVSVGVYGWA