- Transcript BART1_0-u54453.046
- Transcript IDBART1_0-u54453.046
- Gene IDBART1_0-u54453
Barley RTD
Exon Structure of BART1_0-u54453.046
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514442934 | 514442715 | - |
| chr7H | 2 | 514443422 | 514443015 | - |
| chr7H | 3 | 514443642 | 514443512 | - |
| chr7H | 4 | 514444179 | 514444164 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 4.42102 | 0 | 0 |
| morex | ETI | 4.28696 | 0.000374997 | 2.74033 |
| morex | LEA | 0.467329 | 0 | 0.861491 |
| morex | EPI | 0.0650711 | 2.56654 | 0.413249 |
| morex | ROO | 7.26247 | 1.22888 | 1.44822 |
| morex | ROO2 | 0.554396 | 0 | 0.492459 |
| morex | NOD | 2.45594 | 2.91296 | 2.93955 |
| morex | RAC | 1.32671 | 0.166124 | 0 |
| morex | INF1 | 0 | 0.535281 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 1.18161 | 0 |
| morex | LEM | 0.249273 | 0 | 0.437135 |
| morex | LOD | 0 | 0.000000253619 | 0 |
| morex | PAL | 0.217425 | 0.939651 | 0 |
| morex | SEN | 0.403051 | 0 | 0.969952 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.3 | +1 | 3e-58 | 184 | 88/102 (86%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G11840 @ ARAPORT AT1G11840.5 @ TAIR |
+1 | 4e-43 | 146 | 68/94 (72%) | Symbols: ATGLX1, GLX1 | glyoxalase I homolog | chr1:3996045-3997290 FORWARD LENGTH=232 |
| BRACH PP3 | Bradi3g14960.1.p | +1 | 2e-56 | 183 | 85/102 (83%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (775 bp)
>BART1_0-u54453.046 775 150831_barley_pseudomolecules CTGGGCTGTGGGGGAGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTGGAAAGTCCGC CGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATGCTGTTTACCG TGTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGAATGCTTTGGGATGAAGCTGCT GAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTTGGACCTGA GGATACTAATTTTGCACTTGAGCTGACTTACAGTATGTTCATCGTCCACTCACAGTTGTT TCTAATGCAGCCGGTTTGATATTCTTGTTAATGTTTGGGCAAAGTGTGTATCCACCTCAG TGAGAAGACTGGCAAACTAACGGGGCCTTGTTCTTCTCTCTACATATGAACCGATAAACT ATTTTGTGGGACTATACTGTCATTGTTTGCCACCTCCTGTTGTGCTAATATGCTCGTTCT CGTTTGATAGATTATGGTGTTGACAAGTACGACATTGGAGCGGGCTTTGGACATTTTGCC ATCGCAAATGAGGATGTGTACAAGCTGTCTGAGACAATTAAATCATCTGATTGTTGTAAG ATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTCCACTGTGATTGCCTTTGCACAAGAC CCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGGTCCGACGCCTGAGCCTCTCTGTCAA GTTATGCTTCGTGTTGGTGACCTTGATCGGGCTATCATGTTCTACGAGAAGGTAT
Protein Sequence (105 aa)
>BART1_0-u54453.046 105 150831_barley_pseudomolecules WAVGEVTTGMATGSEAGKSAEAVLEWPKQDKKRMLHAVYRVGDLDKTIKCYTECFGMKLL RKRDVPEEKYTNAFLGFGPEDTNFALELTYSMFIVHSQLFLMQPV