- Transcript BART1_0-u54453.045
- Transcript IDBART1_0-u54453.045
- Gene IDBART1_0-u54453
Barley RTD
Exon Structure of BART1_0-u54453.045
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514442603 | 514442552 | - |
| chr7H | 2 | 514443079 | 514442719 | - |
| chr7H | 3 | 514443422 | 514443298 | - |
| chr7H | 4 | 514444206 | 514443512 | - |
| chr7H | 5 | 514444719 | 514444530 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.2 | +2 | 3e-97 | 206 | 96/104 (92%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G67280 @ ARAPORT AT1G67280.1 @ TAIR |
+2 | 5e-75 | 169 | 79/118 (67%) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350 |
| BRACH PP3 | Bradi2g31810.1.p | +2 | 4e-74 | 162 | 71/93 (76%) | pacid=32770913 transcript=Bradi2g31810.1 locus=Bradi2g31810 ID=Bradi2g31810.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1423 bp)
>BART1_0-u54453.045 1423 150831_barley_pseudomolecules GCCGACACGCGCCCACAGCCCATCTGGCCAGCTTTAGTGGGAGGGATGCGCTTTTACAGC CTGTGAGGAGGTACCACGTCGCCATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTT CTCCTTGGAAGCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCG TATTTCCGGGCAGAACATCTTCCTGGCGTGGTAGCGGCTGGGCTGTGGGGGAGGTGCTCA TGGATGGATTGGGATCCTTTCGCCTCAGCGCAGGGATTTGGGGGCGCTACTTATTTATCC AGTCCTGCCGCTAGTTGCTGCTAATTTATCCAGTGATGCTGCTGTTACTCACTACTGTAT TCTTTTGCTTTTAGGGAGGTGCAGTATTTAGTTAGGATAATTTTGATAGAGGAGTGCTGT TGCTACTGTATTCTTTTGCTTTTACTTCCTTTGTTCCTAAATATAAGACCTTTTAGAGAT TTCACTATAGACTTAGTTTGGAGTGTAGATTCTTTTATTTTGCTCCGTATGGATTCTATA GTAGAATCTCTAAAAGGTTTTATATTTAGGAACGAAGGGAGTATACGATATATAGGAGAG AGTATAGACAATCTGCTGGAAAACTAGAAATTTTGAGAGGGAATCGTTTTGGACCATTGT CTATATATATATATATACACACACACACAAGCTGCTACAGATGCTCTTACCTCTTTCCTT GCTATAATAATTGAGTGCATAACAACTCTTACAGGTGACAACAGGGATGGCTACCGGTAG CGAAGCTGGAAAGTCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAGGAT GCTGCATGCTGTTTACCGTGTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGAATG CTTTGGGATGAAGCTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTT TCTTGGGTTTGGACCTGAGGATACTAATTTTGCACTTGAGCTGACTTACAATTATGGTGT TGACAAGTACGACATTGGAGCGGGCTTTGGACATTTTGCCATCGCAAATGAGGATGTATG TATTGTTTACCTGCAACATCTTACCCTTTATGTTACAGACCCTTGGGCTTGTTTGATGTC ATGGATGCAATGCAGGTGTACAAGCTGTCTGAGACAATTAAATCATCTGATTGTTGTAAG ATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTCCACTGTGATTGCCTTTGCACAAGAC CCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGGTCCGACGCCTGAGCCTCTCTGTCAA GTTATGCTTCGTGTTGGTGACCTTGATCGGGCTATCATGTTCTACGAGAAGGCCCTTGGG ATGAAGCTTCTGAGGAAGAAGGATGTGCCTCAGTATAAGGTAC
Protein Sequence (158 aa)
>BART1_0-u54453.045 158 150831_barley_pseudomolecules MATGSEAGKSAEAVLEWPKQDKKRMLHAVYRVGDLDKTIKCYTECFGMKLLRKRDVPEEK YTNAFLGFGPEDTNFALELTYNYGVDKYDIGAGFGHFAIANEDVCIVYLQHLTLYVTDPW ACLMSWMQCRCTSCLRQLNHLIVVRSLVNLVLSREGPL