- Transcript BART1_0-u54453.043
- Transcript IDBART1_0-u54453.043
- Gene IDBART1_0-u54453
Barley RTD
Exon Structure of BART1_0-u54453.043
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514442603 | 514442363 | - |
| chr7H | 2 | 514442934 | 514442719 | - |
| chr7H | 3 | 514443422 | 514443015 | - |
| chr7H | 4 | 514443632 | 514443512 | - |
| chr7H | 5 | 514444696 | 514444530 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0.0260628 |
| morex | LEA | 0 | 1.52696 | 0 |
| morex | EPI | 0 | 0.230932 | 0.810936 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0.605343 | 0 |
| morex | INF1 | 0.836997 | 1.28573 | 0.586739 |
| morex | INF2 | 3.56102 | 0 | 0 |
| morex | CAR5 | 0 | 0.840613 | 0 |
| morex | CAR15 | 0.326969 | 0.680157 | 0 |
| morex | LEM | 0 | 0 | 0.0775666 |
| morex | LOD | 0.320943 | 0.276107 | 0.56035 |
| morex | PAL | 0.329862 | 0 | 0.223636 |
| morex | SEN | 0 | 0.10945 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.2 | +1 | 8e-88 | 268 | 134/174 (77%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G67280 @ ARAPORT AT1G67280.2 @ TAIR |
+1 | 1e-68 | 217 | 112/174 (64%) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190134 REVERSE LENGTH=262 |
| BRACH PP3 | Bradi3g14960.1.p | +1 | 4e-88 | 268 | 133/174 (76%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1153 bp)
>BART1_0-u54453.043 1153 150831_barley_pseudomolecules CTGGCCAGCTTTAGTGGGAGGGATGCGCTTTTACAGCCTGTGAGGAGGTACCACGTCGCC ATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTTCTCCTTGGAAGCCTCTAGACTGA GCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCCGGGGGATGGCTACCGG TAGCGAAGCTGGAAAGTCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAG GATGCTGCATGCTGTTTACCGTGTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGA ATGCTTTGGGATGAAGCTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGC GTTTCTTGGGTTTGGACCTGAGGATACTAATTTTGCACTTGAGCTGACTTACAGTATGTT CATCGTCCACTCACAGTTGTTTCTAATGCAGCCGGTTTGATATTCTTGTTAATGTTTGGG CAAAGTGTGTATCCACCTCAGTGAGAAGACTGGCAAACTAACGGGGCCTTGTTCTTCTCT CTACATATGAACCGATAAACTATTTTGTGGGACTATACTGTCATTGTTTGCCACCTCCTG TTGTGCTAATATGCTCGTTCTCGTTTGATAGATTATGGTGTTGACAAGTACGACATTGGA GCGGGCTTTGGACATTTTGCCATCGCAAATGAGGATGTGTACAAGCTGTCTGAGACAATT AAATCATCTGATTGTTGTAAGATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTCCACT GTGATTGCCTTTGCACAAGACCCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGGTCCG ACGCCTGAGCCTCTCTGTCAAGTTATGCTTCGTGTTGGTGACCTTGATCGGGCTATCATG TTCTACGAGAAGGCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGTGCCTCAGTATAAG GTACATCACATGACAATTGTTGTGTTGATGCCATTTGTCCTCTAAATTTTGATACACTGA GCATATTTATGATTTGTGCAGTACACCATTGCCATGATGGGCTATGCTGAGGAGGACAAG ACCACTGTTCTGGAGTTGACATACAACTATGGTGTCACGGAATATAACAAGGGCAATGCA TATGCTCAGGTAT
Protein Sequence ( aa)
>BART1_0-u54453.043 150831_barley_pseudomolecules