- Transcript BART1_0-u54453.034
- Transcript IDBART1_0-u54453.034
- Gene IDBART1_0-u54453
Barley RTD
Exon Structure of BART1_0-u54453.034
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514442287 | 514441795 | - |
| chr7H | 2 | 514442474 | 514442367 | - |
| chr7H | 3 | 514442603 | 514442556 | - |
| chr7H | 4 | 514442934 | 514442719 | - |
| chr7H | 5 | 514443079 | 514443015 | - |
| chr7H | 6 | 514443422 | 514443298 | - |
| chr7H | 7 | 514443642 | 514443512 | - |
| chr7H | 8 | 514444782 | 514444237 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.403709 | 1.84919 | 0.304227 |
| morex | ETI | 0.358765 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0.193324 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0.301433 |
| morex | NOD | 0.460769 | 0 | 0.285747 |
| morex | RAC | 0.465159 | 0.424871 | 0 |
| morex | INF1 | 0.727233 | 0.237851 | 0.944095 |
| morex | INF2 | 0.601138 | 0 | 0 |
| morex | CAR5 | 0.61692 | 0.177743 | 0.551392 |
| morex | CAR15 | 0.233359 | 0.265768 | 0.433562 |
| morex | LEM | 0 | 0.142467 | 0 |
| morex | LOD | 0 | 0.140589 | 0.184082 |
| morex | PAL | 0 | 0.149374 | 0 |
| morex | SEN | 0.222484 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.1 | +1 | 0.0 | 540 | 263/291 (90%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G11840 @ ARAPORT AT1G11840.6 @ TAIR |
+1 | 7e-149 | 431 | 204/288 (71%) | Symbols: GLX1 | glyoxalase I homolog | chr1:3995928-3997518 FORWARD LENGTH=322 |
| BRACH PP3 | Bradi3g14960.1.p | +1 | 0.0 | 547 | 263/281 (94%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1732 bp)
>BART1_0-u54453.034 1732 150831_barley_pseudomolecules GTCAATCTTATCTTGAGTGCCGGCATGGCCCATTTGTAACCTTGCTGGGCCAGGCCCATC CATGCCGACACGCGCCCACAGCCCATCTGGCCAGCTTTAGTGGGAGGGATGCGCTTTTAC AGCCTGTGAGGAGGTACCACGTCGCCATCAACGCAATCATAAGTATCGGTGCCGGACTCT CTTCTCCTTGGAAGCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGA TCGTATTTCCGGGGTGAGCATCCCCAAATCCATCTCCTTCGTCCTCTCTTCCGCTTGCTT CCTTTACGCGCCGGTGCGTAGTTTTCCGATTCGCCGTTCCTTTAATGTCTGCTTGTAGAT TTCTTACAGGTTTCTGATAGATGGCCTCCTTCCCTTTCTTATTTGGATTCGTATCTGTAT GTAGTTTGATTTGTTTCAAGCACTGCGTCTGGGGAGGATTTTTGGAAAACAGAGTGAATC ATGGGAAAACCCCCGATCCGGATTTTTTAGAACCACCCCCAATCCAACTATGCGTGCAGT TTGCTGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTGGAAAGTCCGCCGAGGCCGTG CTGGAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATGCTGTTTACCGTGTGGGAGAT CTTGACAAAACCATTAAGTGTTACACAGAATGCTTTGGGATGAAGCTGCTGAGGAAAAGA GATGTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTTGGACCTGAGGATACTAAT TTTGCACTTGAGCTGACTTACAATTATGGTGTTGACAAGTACGACATTGGAGCGGGCTTT GGACATTTTGCCATCGCAAATGAGGATGTGTACAAGCTGTCTGAGACAATTAAATCATCT GATTGTTGTAAGATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTCCACTGTGATTGCC TTTGCACAAGACCCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGGTCCGACGCCTGAG CCTCTCTGTCAAGTTATGCTTCGTGTTGGTGACCTTGATCGGGCTATCATGTTCTACGAG AAGGCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGTGCCTCAGTATAAGTACACCATT GCCATGATGGGCTATGCTGAGGAGGACAAGACCACTGTTCTGGAGTTGACATACAACTAT GGTGTCACGGAATATAACAAGGGCAATGCATATGCTCAGGTTGCTATTGGCACTGACGAT GTGTACAAGAGCGCCGAAGCAGTTGAGCTGGTTACCAAAGAACTAGGTGGAAAGATTCTA AGGCAGCCAGGGCCACTACCGGGGCTGAACACCAAAATCACCTCTTTCCTTGACCCAGAT GGCTGGAAAGTGGTATGTCTTCTGGATGTCTTGTGCATAACACTGCTTTATTTGAATCGA GGGGGTCATTAACAGTTAATTATGAATTCAAGATGTGCTTGCTGTAGTCAATGATTGGTT TAAAATTTGAAGAGCTTACCGTAGTCAATGTACTTTGGCAGTTAAATGAATTAATTTGAA ACGAAACGAAGGACAATTCAATTGGCCTGCACAACTACTGTAGTCACAGCTTAATTGCTA GTTCCTCTCTAGAAACGAACTATTGCCAGTTGGTACATACTCCCTCCTGTCTCTGAAAAG AAGGCCTATAAATTTGTCTGAAGTCAAACCGTACATAGTTTGACCATGTTTG
Protein Sequence (297 aa)
>BART1_0-u54453.034 297 150831_barley_pseudomolecules MATGSEAGKSAEAVLEWPKQDKKRMLHAVYRVGDLDKTIKCYTECFGMKLLRKRDVPEEK YTNAFLGFGPEDTNFALELTYNYGVDKYDIGAGFGHFAIANEDVYKLSETIKSSDCCKIT REPGPVKGGSTVIAFAQDPDGYLFELIQRGPTPEPLCQVMLRVGDLDRAIMFYEKALGMK LLRKKDVPQYKYTIAMMGYAEEDKTTVLELTYNYGVTEYNKGNAYAQVAIGTDDVYKSAE AVELVTKELGGKILRQPGPLPGLNTKITSFLDPDGWKVVCLLDVLCITLLYLNRGGH