- Transcript BART1_0-u54453.031
- Transcript IDBART1_0-u54453.031
- Gene IDBART1_0-u54453
Barley RTD
Exon Structure of BART1_0-u54453.031
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514442287 | 514440931 | - |
| chr7H | 2 | 514442474 | 514442367 | - |
| chr7H | 3 | 514442603 | 514442556 | - |
| chr7H | 4 | 514442934 | 514442719 | - |
| chr7H | 5 | 514443079 | 514443015 | - |
| chr7H | 6 | 514443422 | 514443298 | - |
| chr7H | 7 | 514444206 | 514443512 | - |
| chr7H | 8 | 514444649 | 514444530 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 7.36897 | 3.03869 | 4.63648 |
| morex | ETI | 2.85322 | 2.29184 | 1.83333 |
| morex | LEA | 0.185069 | 2.3475 | 1.18054 |
| morex | EPI | 4.67382 | 4.23272 | 3.32013 |
| morex | ROO | 2.35135 | 0.625497 | 0.491206 |
| morex | ROO2 | 0.77547 | 0.248187 | 0.620443 |
| morex | NOD | 6.91499 | 2.73573 | 1.73927 |
| morex | RAC | 3.66356 | 2.80092 | 1.46792 |
| morex | INF1 | 0.0178975 | 2.91557 | 0.644961 |
| morex | INF2 | 1.77777 | 3.43446 | 5.51511 |
| morex | CAR5 | 0.768991 | 1.45386 | 2.38943 |
| morex | CAR15 | 0.000000704448 | 0.995401 | 0 |
| morex | LEM | 0.708072 | 1.16914 | 1.19949 |
| morex | LOD | 1.11208 | 1.07641 | 3.1755 |
| morex | PAL | 1.19138 | 2.21839 | 1.3825 |
| morex | SEN | 0.496121 | 1.94373 | 1.317 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.1 | +1 | 0.0 | 540 | 263/291 (90%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G11840 @ ARAPORT AT1G11840.4 @ TAIR |
+1 | 1e-143 | 427 | 200/271 (74%) | Symbols: ATGLX1, GLX1 | glyoxalase I homolog | chr1:3996045-3997518 FORWARD LENGTH=283 |
| BRACH PP3 | Bradi3g14960.1.p | +1 | 0.0 | 547 | 263/281 (94%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2734 bp)
>BART1_0-u54453.031 2734 150831_barley_pseudomolecules GTACCACGTCGCCATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTTCTCCTTGGAA GCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCCGGG CAGAACATCTTCCTGGCGTGGTAGCGGCTGGGCTGTGGGGGAGGTGCTCATGGATGGATT GGGATCCTTTCGCCTCAGCGCAGGGATTTGGGGGCGCTACTTATTTATCCAGTCCTGCCG CTAGTTGCTGCTAATTTATCCAGTGATGCTGCTGTTACTCACTACTGTATTCTTTTGCTT TTAGGGAGGTGCAGTATTTAGTTAGGATAATTTTGATAGAGGAGTGCTGTTGCTACTGTA TTCTTTTGCTTTTACTTCCTTTGTTCCTAAATATAAGACCTTTTAGAGATTTCACTATAG ACTTAGTTTGGAGTGTAGATTCTTTTATTTTGCTCCGTATGGATTCTATAGTAGAATCTC TAAAAGGTTTTATATTTAGGAACGAAGGGAGTATACGATATATAGGAGAGAGTATAGACA ATCTGCTGGAAAACTAGAAATTTTGAGAGGGAATCGTTTTGGACCATTGTCTATATATAT ATATATACACACACACACAAGCTGCTACAGATGCTCTTACCTCTTTCCTTGCTATAATAA TTGAGTGCATAACAACTCTTACAGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTGGA AAGTCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATGCT GTTTACCGTGTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGAATGCTTTGGGATG AAGCTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTT GGACCTGAGGATACTAATTTTGCACTTGAGCTGACTTACAATTATGGTGTTGACAAGTAC GACATTGGAGCGGGCTTTGGACATTTTGCCATCGCAAATGAGGATGTGTACAAGCTGTCT GAGACAATTAAATCATCTGATTGTTGTAAGATCACTCGTGAACCTGGTCCTGTCAAGGGA GGGTCCACTGTGATTGCCTTTGCACAAGACCCAGATGGTTACTTGTTTGAGCTTATCCAG AGGGGTCCGACGCCTGAGCCTCTCTGTCAAGTTATGCTTCGTGTTGGTGACCTTGATCGG GCTATCATGTTCTACGAGAAGGCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGTGCCT CAGTATAAGTACACCATTGCCATGATGGGCTATGCTGAGGAGGACAAGACCACTGTTCTG GAGTTGACATACAACTATGGTGTCACGGAATATAACAAGGGCAATGCATATGCTCAGGTT GCTATTGGCACTGACGATGTGTACAAGAGCGCCGAAGCAGTTGAGCTGGTTACCAAAGAA CTAGGTGGAAAGATTCTAAGGCAGCCAGGGCCACTACCGGGGCTGAACACCAAAATCACC TCTTTCCTTGACCCAGATGGCTGGAAAGTGGTATGTCTTCTGGATGTCTTGTGCATAACA CTGCTTTATTTGAATCGAGGGGGTCATTAACAGTTAATTATGAATTCAAGATGTGCTTGC TGTAGTCAATGATTGGTTTAAAATTTGAAGAGCTTACCGTAGTCAATGTACTTTGGCAGT TAAATGAATTAATTTGAAACGAAACGAAGGACAATTCAATTGGCCTGCACAACTACTGTA GTCACAGCTTAATTGCTAGTTCCTCTCTAGAAACGAACTATTGCCAGTTGGTACATACTC CCTCCTGTCTCTGAAAAGAAGGCCTATAAATTTGTCTGAAGTCAAACCGTACATAGTTTG ACCATGTTTGTAAGAAAAACTATCTATAACTACAATATCTACTAAATAGATATGTTATGA AAATATATTTTACTGTGTACCTAATAATATTAATATTAATTTGGTACCATAGTTTTTCAT AATTTATACTACAAACTTGGTCAAACCTTGCACCGTTTGACATCAAAAAAAGATTATAGA CCTTTTCAGAGACGGAGAGAGTACATAGTTTCAGAGACCTCTTGGATTGGCACCTTCAAG GACAATTGTTACTTCGTAAAATAAAATAGAACTTGGAAAACAACATAATCTTATAGAGGT TTATATTAATAGTCTGAGCTGTAGTTCCTCCAGTTGTGTCACCATCATCTATTGTCTAGA GAATAAACTTTAACAGTTTTGAGGCGTCACCCACTTAGTTAGCAGAACACAATCGAGGCT GGTATGCATCCTAGGCGTAGCAAAGCAAATTAATCAAGTGAGGTGGAACTTCACCTCAAA TTTCGCTGCAGCATGATTGTTAATACTGAACATGATTTCTTAAACCCTGTATGTAAACTG GGTTGCAGGCGTGGTTACTAACTGATGTAGTGGTTGCTTTTACTACTGAAAATGACTTAT CTTTTGCAACCAGCCAGCCACAGTATCAGTACGTGACTAATGTTATTCCTCCGGTTGTAG GTTCTGGTGGACTACGCAGACTTCCTCAAGGAGCTGCACTGAAGATGAGCAGGCTCAGAT GTTAGTGTCGTGAGGAGGAACCGTATGTAGCAATGGTCTGTGTGATGTAATAAAACAAAC CTCATGTAGCAAATGGTCTGTGTGCGATGTAATAAAAAGGCAGCCTCTTCCGCTCGACGA ATAAAAATAAAAGCAACTACCGCATGCCCATGCC
Protein Sequence (297 aa)
>BART1_0-u54453.031 297 150831_barley_pseudomolecules MATGSEAGKSAEAVLEWPKQDKKRMLHAVYRVGDLDKTIKCYTECFGMKLLRKRDVPEEK YTNAFLGFGPEDTNFALELTYNYGVDKYDIGAGFGHFAIANEDVYKLSETIKSSDCCKIT REPGPVKGGSTVIAFAQDPDGYLFELIQRGPTPEPLCQVMLRVGDLDRAIMFYEKALGMK LLRKKDVPQYKYTIAMMGYAEEDKTTVLELTYNYGVTEYNKGNAYAQVAIGTDDVYKSAE AVELVTKELGGKILRQPGPLPGLNTKITSFLDPDGWKVVCLLDVLCITLLYLNRGGH