Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u54453.026

ChromosomeExonStartStopDirection
chr7H1514441144514440926-
chr7H2514442287514442135-
chr7H3514442474514442367-
chr7H4514442603514442556-
chr7H5514442934514442719-
chr7H6514443079514443015-
chr7H7514443422514443298-
chr7H8514443661514443512-
chr7H9514444656514444530-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB001.56506
morexETI222.912189.095130.537
morexLEA000
morexEPI167.041197.068146.288
morexROO00.2208790
morexROO2167.163199.227209.943
morexNOD0180.425214.905
morexRAC281.802255.161214.032
morexINF1000
morexINF2000
morexCAR5000
morexCAR15000
morexLEM153.586119.511180.595
morexLOD223.554328.881181.196
morexPAL225.086173.858103.318
morexSEN121.08182.3575154.958



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g09250.2 +3 0.0 555 269/292 (92%) protein|glyoxalase family protein, putative, expressed
TAIR PP10 AT1G11840 @ ARAPORT
AT1G11840.4 @ TAIR		 +3 1e-156 442 209/281 (74%) Symbols: ATGLX1, GLX1 | glyoxalase I homolog | chr1:3996045-3997518 FORWARD LENGTH=283
BRACH PP3 Bradi3g14960.1.p +3 0.0 570 275/292 (94%) pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1211 bp)

>BART1_0-u54453.026 1211 150831_barley_pseudomolecules
TGAGGAGGTACCACGTCGCCATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTTCTC
CTTGGAAGCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTAT
TTCCGGGTGCATAACAACTCTTACAGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTG
GAAAGTCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATG
CTGTTTACCGTGTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGAATGCTTTGGGA
TGAAGCTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGT
TTGGACCTGAGGATACTAATTTTGCACTTGAGCTGACTTACAATTATGGTGTTGACAAGT
ACGACATTGGAGCGGGCTTTGGACATTTTGCCATCGCAAATGAGGATGTGTACAAGCTGT
CTGAGACAATTAAATCATCTGATTGTTGTAAGATCACTCGTGAACCTGGTCCTGTCAAGG
GAGGGTCCACTGTGATTGCCTTTGCACAAGACCCAGATGGTTACTTGTTTGAGCTTATCC
AGAGGGGTCCGACGCCTGAGCCTCTCTGTCAAGTTATGCTTCGTGTTGGTGACCTTGATC
GGGCTATCATGTTCTACGAGAAGGCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGTGC
CTCAGTATAAGTACACCATTGCCATGATGGGCTATGCTGAGGAGGACAAGACCACTGTTC
TGGAGTTGACATACAACTATGGTGTCACGGAATATAACAAGGGCAATGCATATGCTCAGG
TTGCTATTGGCACTGACGATGTGTACAAGAGCGCCGAAGCAGTTGAGCTGGTTACCAAAG
AACTAGGTGGAAAGATTCTAAGGCAGCCAGGGCCACTACCGGGGCTGAACACCAAAATCA
CCTCTTTCCTTGACCCAGATGGCTGGAAAGTGGTTCTGGTGGACTACGCAGACTTCCTCA
AGGAGCTGCACTGAAGATGAGCAGGCTCAGATGTTAGTGTCGTGAGGAGGAACCGTATGT
AGCAATGGTCTGTGTGATGTAATAAAACAAACCTCATGTAGCAAATGGTCTGTGTGCGAT
GTAATAAAAAGGCAGCCTCTTCCGCTCGACGAATAAAAATAAAAGCAACTACCGCATGCC
CATGCCGTCAT



Protein Sequence (291 aa)

>BART1_0-u54453.026 291 150831_barley_pseudomolecules
MATGSEAGKSAEAVLEWPKQDKKRMLHAVYRVGDLDKTIKCYTECFGMKLLRKRDVPEEK
YTNAFLGFGPEDTNFALELTYNYGVDKYDIGAGFGHFAIANEDVYKLSETIKSSDCCKIT
REPGPVKGGSTVIAFAQDPDGYLFELIQRGPTPEPLCQVMLRVGDLDRAIMFYEKALGMK
LLRKKDVPQYKYTIAMMGYAEEDKTTVLELTYNYGVTEYNKGNAYAQVAIGTDDVYKSAE
AVELVTKELGGKILRQPGPLPGLNTKITSFLDPDGWKVVLVDYADFLKELH