- Transcript BART1_0-u54453.025
- Transcript IDBART1_0-u54453.025
- Gene IDBART1_0-u54453
Barley RTD
Exon Structure of BART1_0-u54453.025
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514441144 | 514440926 | - |
| chr7H | 2 | 514442287 | 514442135 | - |
| chr7H | 3 | 514442474 | 514442367 | - |
| chr7H | 4 | 514442603 | 514442556 | - |
| chr7H | 5 | 514442934 | 514442719 | - |
| chr7H | 6 | 514443079 | 514443015 | - |
| chr7H | 7 | 514443422 | 514443298 | - |
| chr7H | 8 | 514444206 | 514443512 | - |
| chr7H | 9 | 514444643 | 514444470 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.33502 | 1.66482 | 2.0566 |
| morex | ETI | 0.821816 | 3.60187 | 2.51141 |
| morex | LEA | 0.619024 | 0 | 0 |
| morex | EPI | 1.32734 | 2.46902 | 1.41892 |
| morex | ROO | 0 | 3.11203 | 0.615676 |
| morex | ROO2 | 0.00140675 | 1.50756 | 2.25896 |
| morex | NOD | 0.000100115 | 4.0318 | 2.78269 |
| morex | RAC | 0.000809041 | 0.000000889191 | 4.59247 |
| morex | INF1 | 0.313113 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 8.03705 | 8.65026 | 2.18704 |
| morex | CAR15 | 0 | 1.25112 | 2.69514 |
| morex | LEM | 1.33651 | 0.553796 | 3.18995 |
| morex | LOD | 3.80534 | 2.72182 | 0.00362786 |
| morex | PAL | 0.0000287964 | 1.61296 | 3.14894 |
| morex | SEN | 0.315118 | 0.349913 | 0.479676 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.2 | +1 | 0.0 | 555 | 269/292 (92%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G11840 @ ARAPORT AT1G11840.4 @ TAIR |
+1 | 1e-153 | 442 | 209/281 (74%) | Symbols: ATGLX1, GLX1 | glyoxalase I homolog | chr1:3996045-3997518 FORWARD LENGTH=283 |
| BRACH PP3 | Bradi3g14960.1.p | +1 | 0.0 | 570 | 275/292 (94%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1803 bp)
>BART1_0-u54453.025 1803 150831_barley_pseudomolecules CGTCGCCATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTTCTCCTTGGAAGCCTCT AGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCCGGGGTGAGC ATCCCCAAATCCATCTCCTTCGTCCTCTCTTCCGCTTGCTTCCTTTACGCGCCGCAGAAC ATCTTCCTGGCGTGGTAGCGGCTGGGCTGTGGGGGAGGTGCTCATGGATGGATTGGGATC CTTTCGCCTCAGCGCAGGGATTTGGGGGCGCTACTTATTTATCCAGTCCTGCCGCTAGTT GCTGCTAATTTATCCAGTGATGCTGCTGTTACTCACTACTGTATTCTTTTGCTTTTAGGG AGGTGCAGTATTTAGTTAGGATAATTTTGATAGAGGAGTGCTGTTGCTACTGTATTCTTT TGCTTTTACTTCCTTTGTTCCTAAATATAAGACCTTTTAGAGATTTCACTATAGACTTAG TTTGGAGTGTAGATTCTTTTATTTTGCTCCGTATGGATTCTATAGTAGAATCTCTAAAAG GTTTTATATTTAGGAACGAAGGGAGTATACGATATATAGGAGAGAGTATAGACAATCTGC TGGAAAACTAGAAATTTTGAGAGGGAATCGTTTTGGACCATTGTCTATATATATATATAT ACACACACACACAAGCTGCTACAGATGCTCTTACCTCTTTCCTTGCTATAATAATTGAGT GCATAACAACTCTTACAGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTGGAAAGTCC GCCGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATGCTGTTTAC CGTGTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGAATGCTTTGGGATGAAGCTG CTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTTGGACCT GAGGATACTAATTTTGCACTTGAGCTGACTTACAATTATGGTGTTGACAAGTACGACATT GGAGCGGGCTTTGGACATTTTGCCATCGCAAATGAGGATGTGTACAAGCTGTCTGAGACA ATTAAATCATCTGATTGTTGTAAGATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTCC ACTGTGATTGCCTTTGCACAAGACCCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGGT CCGACGCCTGAGCCTCTCTGTCAAGTTATGCTTCGTGTTGGTGACCTTGATCGGGCTATC ATGTTCTACGAGAAGGCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGTGCCTCAGTAT AAGTACACCATTGCCATGATGGGCTATGCTGAGGAGGACAAGACCACTGTTCTGGAGTTG ACATACAACTATGGTGTCACGGAATATAACAAGGGCAATGCATATGCTCAGGTTGCTATT GGCACTGACGATGTGTACAAGAGCGCCGAAGCAGTTGAGCTGGTTACCAAAGAACTAGGT GGAAAGATTCTAAGGCAGCCAGGGCCACTACCGGGGCTGAACACCAAAATCACCTCTTTC CTTGACCCAGATGGCTGGAAAGTGGTTCTGGTGGACTACGCAGACTTCCTCAAGGAGCTG CACTGAAGATGAGCAGGCTCAGATGTTAGTGTCGTGAGGAGGAACCGTATGTAGCAATGG TCTGTGTGATGTAATAAAACAAACCTCATGTAGCAAATGGTCTGTGTGCGATGTAATAAA AAGGCAGCCTCTTCCGCTCGACGAATAAAAATAAAAGCAACTACCGCATGCCCATGCCGT CAT
Protein Sequence (291 aa)
>BART1_0-u54453.025 291 150831_barley_pseudomolecules MATGSEAGKSAEAVLEWPKQDKKRMLHAVYRVGDLDKTIKCYTECFGMKLLRKRDVPEEK YTNAFLGFGPEDTNFALELTYNYGVDKYDIGAGFGHFAIANEDVYKLSETIKSSDCCKIT REPGPVKGGSTVIAFAQDPDGYLFELIQRGPTPEPLCQVMLRVGDLDRAIMFYEKALGMK LLRKKDVPQYKYTIAMMGYAEEDKTTVLELTYNYGVTEYNKGNAYAQVAIGTDDVYKSAE AVELVTKELGGKILRQPGPLPGLNTKITSFLDPDGWKVVLVDYADFLKELH