- Transcript BART1_0-u54453.016
- Transcript IDBART1_0-u54453.016
- Gene IDBART1_0-u54453
Barley RTD
Exon Structure of BART1_0-u54453.016
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514441144 | 514440921 | - |
| chr7H | 2 | 514442474 | 514442135 | - |
| chr7H | 3 | 514442603 | 514442556 | - |
| chr7H | 4 | 514442934 | 514442719 | - |
| chr7H | 5 | 514443079 | 514443015 | - |
| chr7H | 6 | 514443422 | 514443298 | - |
| chr7H | 7 | 514443632 | 514443512 | - |
| chr7H | 8 | 514444674 | 514444530 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 12.9101 | 7.97297 | 11.9202 |
| morex | ETI | 3.26866 | 3.43946 | 5.11925 |
| morex | LEA | 3.0082 | 0 | 0 |
| morex | EPI | 0.873006 | 1.36053 | 0 |
| morex | ROO | 5.11785 | 1.72152 | 1.4453 |
| morex | ROO2 | 2.58267 | 1.94255 | 4.32389 |
| morex | NOD | 5.03051 | 0 | 1.60326 |
| morex | RAC | 2.20117 | 7.02289 | 2.77065 |
| morex | INF1 | 3.77766 | 1.97176 | 4.98765 |
| morex | INF2 | 1.70062 | 1.41761 | 5.78629 |
| morex | CAR5 | 11.0567 | 10.9932 | 17.1536 |
| morex | CAR15 | 4.96989 | 4.14611 | 7.02928 |
| morex | LEM | 1.70615 | 2.69903 | 3.19014 |
| morex | LOD | 0.832368 | 5.60003 | 1.37289 |
| morex | PAL | 2.09743 | 3.14539 | 3.53153 |
| morex | SEN | 0.0704437 | 1.7035 | 2.53953 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.2 | +1 | 8e-155 | 440 | 210/231 (91%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G67280 @ ARAPORT AT1G67280.1 @ TAIR |
+1 | 2e-121 | 357 | 171/232 (74%) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350 |
| BRACH PP3 | Bradi3g14960.1.p | +1 | 2e-158 | 446 | 213/231 (92%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1284 bp)
>BART1_0-u54453.016 1284 150831_barley_pseudomolecules ATGCGCTTTTACAGCCTGTGAGGAGGTACCACGTCGCCATCAACGCAATCATAAGTATCG GTGCCGGACTCTCTTCTCCTTGGAAGCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGG ATCTCTGCCGGATCGTATTTCCGGGGGATGGCTACCGGTAGCGAAGCTGGAAAGTCCGCC GAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATGCTGTTTACCGT GTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGAATGCTTTGGGATGAAGCTGCTG AGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTTGGACCTGAG GATACTAATTTTGCACTTGAGCTGACTTACAATTATGGTGTTGACAAGTACGACATTGGA GCGGGCTTTGGACATTTTGCCATCGCAAATGAGGATGTGTACAAGCTGTCTGAGACAATT AAATCATCTGATTGTTGTAAGATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTCCACT GTGATTGCCTTTGCACAAGACCCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGGTCCG ACGCCTGAGCCTCTCTGTCAAGTTATGCTTCGTGTTGGTGACCTTGATCGGGCTATCATG TTCTACGAGAAGGCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGTGCCTCAGTATAAG TACACCATTGCCATGATGGGCTATGCTGAGGAGGACAAGACCACTGTTCTGGAGTTGACA TACAACTATGGTGTCACGGAATATAACAAGGGCAATGCATATGCTCAGGTATTGACAGGT TTTCTTCTGCGCTTATTTCCTTTTCTAAGTTTTGGCATTTCTTAATTATTGTGTTGCCTA AGTGCAGGTTGCTATTGGCACTGACGATGTGTACAAGAGCGCCGAAGCAGTTGAGCTGGT TACCAAAGAACTAGGTGGAAAGATTCTAAGGCAGCCAGGGCCACTACCGGGGCTGAACAC CAAAATCACCTCTTTCCTTGACCCAGATGGCTGGAAAGTGGTTCTGGTGGACTACGCAGA CTTCCTCAAGGAGCTGCACTGAAGATGAGCAGGCTCAGATGTTAGTGTCGTGAGGAGGAA CCGTATGTAGCAATGGTCTGTGTGATGTAATAAAACAAACCTCATGTAGCAAATGGTCTG TGTGCGATGTAATAAAAAGGCAGCCTCTTCCGCTCGACGAATAAAAATAAAAGCAACTAC CGCATGCCCATGCCGTCATTNNNN
Protein Sequence (245 aa)
>BART1_0-u54453.016 245 150831_barley_pseudomolecules MATGSEAGKSAEAVLEWPKQDKKRMLHAVYRVGDLDKTIKCYTECFGMKLLRKRDVPEEK YTNAFLGFGPEDTNFALELTYNYGVDKYDIGAGFGHFAIANEDVYKLSETIKSSDCCKIT REPGPVKGGSTVIAFAQDPDGYLFELIQRGPTPEPLCQVMLRVGDLDRAIMFYEKALGMK LLRKKDVPQYKYTIAMMGYAEEDKTTVLELTYNYGVTEYNKGNAYAQVLTGFLLRLFPFL SFGIS