- Transcript BART1_0-u54453.015
- Transcript IDBART1_0-u54453.015
- Gene IDBART1_0-u54453
Barley RTD
Exon Structure of BART1_0-u54453.015
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 514442287 | 514440921 | - |
| chr7H | 2 | 514442474 | 514442367 | - |
| chr7H | 3 | 514442934 | 514442556 | - |
| chr7H | 4 | 514443079 | 514443015 | - |
| chr7H | 5 | 514443422 | 514443298 | - |
| chr7H | 6 | 514444206 | 514443512 | - |
| chr7H | 7 | 514444718 | 514444530 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0.1034 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 1.03636 | 0.869677 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 1.03541 | 1.55647 | 2.43464 |
| morex | INF2 | 0.585437 | 0 | 0.00000000104321 |
| morex | CAR5 | 0 | 0 | 1.1944 |
| morex | CAR15 | 0.559248 | 0 | 0.437658 |
| morex | LEM | 0 | 0 | 0.000000016585 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.1 | +1 | 4e-148 | 342 | 163/181 (90%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G67280 @ ARAPORT AT1G67280.1 @ TAIR |
+1 | 5e-115 | 273 | 131/190 (69%) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350 |
| BRACH PP3 | Bradi3g14960.1.p | +1 | 2e-150 | 348 | 165/181 (91%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2928 bp)
>BART1_0-u54453.015 2928 150831_barley_pseudomolecules CCGACACGCGCCCACAGCCCATCTGGCCAGCTTTAGTGGGAGGGATGCGCTTTTACAGCC TGTGAGGAGGTACCACGTCGCCATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTTC TCCTTGGAAGCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGT ATTTCCGGGCAGAACATCTTCCTGGCGTGGTAGCGGCTGGGCTGTGGGGGAGGTGCTCAT GGATGGATTGGGATCCTTTCGCCTCAGCGCAGGGATTTGGGGGCGCTACTTATTTATCCA GTCCTGCCGCTAGTTGCTGCTAATTTATCCAGTGATGCTGCTGTTACTCACTACTGTATT CTTTTGCTTTTAGGGAGGTGCAGTATTTAGTTAGGATAATTTTGATAGAGGAGTGCTGTT GCTACTGTATTCTTTTGCTTTTACTTCCTTTGTTCCTAAATATAAGACCTTTTAGAGATT TCACTATAGACTTAGTTTGGAGTGTAGATTCTTTTATTTTGCTCCGTATGGATTCTATAG TAGAATCTCTAAAAGGTTTTATATTTAGGAACGAAGGGAGTATACGATATATAGGAGAGA GTATAGACAATCTGCTGGAAAACTAGAAATTTTGAGAGGGAATCGTTTTGGACCATTGTC TATATATATATATATACACACACACACAAGCTGCTACAGATGCTCTTACCTCTTTCCTTG CTATAATAATTGAGTGCATAACAACTCTTACAGGTGACAACAGGGATGGCTACCGGTAGC GAAGCTGGAAAGTCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAGGATG CTGCATGCTGTTTACCGTGTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGAATGC TTTGGGATGAAGCTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTTT CTTGGGTTTGGACCTGAGGATACTAATTTTGCACTTGAGCTGACTTACAATTATGGTGTT GACAAGTACGACATTGGAGCGGGCTTTGGACATTTTGCCATCGCAAATGAGGATGTGTAC AAGCTGTCTGAGACAATTAAATCATCTGATTGTTGTAAGATCACTCGTGAACCTGGTCCT GTCAAGGGAGGGTCCACTGTGATTGCCTTTGCACAAGACCCAGATGGTTACTTGTTTGAG CTTATCCAGAGGGGTCCGACGCCTGAGCCTCTCTGTCAAGTTATGCTTCGTGTTGGTGAC CTTGATCGGGCTATCATGTTCTACGAGAAGGTATTGTTTTGTAAAATGGGAGGTTGTTTG AAATGTTAAGAGACAGTATCCTTTCTGTATATTCTCTAGAACTATAGTTTTATATGGGAT ATTCTAACATTTGACTTTTATGCAGGCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGT GCCTCAGTATAAGTACACCATTGCCATGATGGGCTATGCTGAGGAGGACAAGACCACTGT TCTGGAGTTGACATACAACTATGGTGTCACGGAATATAACAAGGGCAATGCATATGCTCA GGTTGCTATTGGCACTGACGATGTGTACAAGAGCGCCGAAGCAGTTGAGCTGGTTACCAA AGAACTAGGTGGAAAGATTCTAAGGCAGCCAGGGCCACTACCGGGGCTGAACACCAAAAT CACCTCTTTCCTTGACCCAGATGGCTGGAAAGTGGTATGTCTTCTGGATGTCTTGTGCAT AACACTGCTTTATTTGAATCGAGGGGGTCATTAACAGTTAATTATGAATTCAAGATGTGC TTGCTGTAGTCAATGATTGGTTTAAAATTTGAAGAGCTTACCGTAGTCAATGTACTTTGG CAGTTAAATGAATTAATTTGAAACGAAACGAAGGACAATTCAATTGGCCTGCACAACTAC TGTAGTCACAGCTTAATTGCTAGTTCCTCTCTAGAAACGAACTATTGCCAGTTGGTACAT ACTCCCTCCTGTCTCTGAAAAGAAGGCCTATAAATTTGTCTGAAGTCAAACCGTACATAG TTTGACCATGTTTGTAAGAAAAACTATCTATAACTACAATATCTACTAAATAGATATGTT ATGAAAATATATTTTACTGTGTACCTAATAATATTAATATTAATTTGGTACCATAGTTTT TCATAATTTATACTACAAACTTGGTCAAACCTTGCACCGTTTGACATCAAAAAAAGATTA TAGACCTTTTCAGAGACGGAGAGAGTACATAGTTTCAGAGACCTCTTGGATTGGCACCTT CAAGGACAATTGTTACTTCGTAAAATAAAATAGAACTTGGAAAACAACATAATCTTATAG AGGTTTATATTAATAGTCTGAGCTGTAGTTCCTCCAGTTGTGTCACCATCATCTATTGTC TAGAGAATAAACTTTAACAGTTTTGAGGCGTCACCCACTTAGTTAGCAGAACACAATCGA GGCTGGTATGCATCCTAGGCGTAGCAAAGCAAATTAATCAAGTGAGGTGGAACTTCACCT CAAATTTCGCTGCAGCATGATTGTTAATACTGAACATGATTTCTTAAACCCTGTATGTAA ACTGGGTTGCAGGCGTGGTTACTAACTGATGTAGTGGTTGCTTTTACTACTGAAAATGAC TTATCTTTTGCAACCAGCCAGCCACAGTATCAGTACGTGACTAATGTTATTCCTCCGGTT GTAGGTTCTGGTGGACTACGCAGACTTCCTCAAGGAGCTGCACTGAAGATGAGCAGGCTC AGATGTTAGTGTCGTGAGGAGGAACCGTATGTAGCAATGGTCTGTGTGATGTAATAAAAC AAACCTCATGTAGCAAATGGTCTGTGTGCGATGTAATAAAAAGGCAGCCTCTTCCGCTCG ACGAATAAAAATAAAAGCAACTACCGCATGCCCATGCCGTCATTNNNN
Protein Sequence (187 aa)
>BART1_0-u54453.015 187 150831_barley_pseudomolecules MATGSEAGKSAEAVLEWPKQDKKRMLHAVYRVGDLDKTIKCYTECFGMKLLRKRDVPEEK YTNAFLGFGPEDTNFALELTYNYGVDKYDIGAGFGHFAIANEDVYKLSETIKSSDCCKIT REPGPVKGGSTVIAFAQDPDGYLFELIQRGPTPEPLCQVMLRVGDLDRAIMFYEKVLFCK MGGCLKC