Exon Structure of HORVU7Hr1G106780.6

ChromosomeExonStartStopDirection
chr7H1620784789620784714+
chr7H2620785405620785279+
chr7H3620786382620785866+
chr7H4620786624620786494+
chr7H5620787133620786727+
chr7H6620788394620787261+
chr7H7620789615620788653+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +3 0.0 662 344/514 (67%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR
+3 8e-63 230 144/400 (36%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +3 0.0 1495 780/1030 (76%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3355 bp)

>HORVU7Hr1G106780.6 3355 150831_barley_pseudomolecules
GGGAGCATCTCCTCACCGACCGCGTCCTCTCCCTCCGCGCACGCCTGCACGACGCCCTCT
CCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGCAAAAAAATGGCAGTCTACTGATGCTG
GAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTTTCTCGGTTGTTTGTCAACTGAAA
TGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGATATTCTCGTACTCTTGGAAGGTG
TTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAGTTAG
TTTCCAGCATAGGCAATTCGATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCCCTCT
CATGCCAGTTGTCGGCACACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAATAAACT
GCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAAACCT
TGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTTGATG
TCCATCCACTGAGTTATCTGACCGAGATGATATCACTGCTAAGAACCATACTGTGGACTT
GGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCACATT
ACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCTTTAG
CTTTATGTGGCCATGGAGCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAGATTT
GTGAGCTTGTGGGGACGTCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTCTGCC
ATGTTCTTTTGAGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAGCCTA
TTGTTGAAGGCATAATCGATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAACAGAGG
GGTGTCGTACTGCACTGGTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCTTTTGGT
CTAATGCCATTGATAAAGTATTATATACCATTCTTACGGGCCGCTGCCTCTCCTCGCATC
AAAGTGATCAAGTTTTGTGCGATGATGAGCTATTTGATATGGTTTCCAAAAACTTCATGG
ATATACATCCATACGTCTGGGATATACTTGGATATCTAGTGGTGCATTGCACTGACAAGC
ACCATCCTGTAAGGAAAGGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTGCTTGCT
TGCTGGCCACAGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAGATGTGCAGG
AGCCGGCTTTGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGGATATATTCAGTATG
AGGCAAGTTTTAAACTTTCAGAAGGTCTTCCGTATTTGGGTGATGGCTATTTGAACGTTC
TATTGTCATCATTAGAATCAAATGCTACGAGAAGTGTTGCCACATCTTTTGACAGTTTCA
AAATTATGACCAACCTCATGAACCTAGCATGTTTGGTGCTGTCACGACCTTACCATAATC
TCCTGAACAAGAGGAATCCTATAGATGTGTTGTCCACCATTATCAAGGAATCTCTCCACA
ATCATATACATATTACGAGGTCAAAAGTCACTTCCCATCTGCATTTTTGTTTTGATGGAA
GTTCATGCTGTTGCTATCTCGGTGAAGAGTGGGAGGGTGAAAACATAGTTTTATTCTACG
GTCTTGTTGTGCTGTTTAATCTTATGAGGAGCACTACTTTAGTTTGTGTTCAGTGTAAGA
GGAAGTTGGATGTTGGAAATCTGTGCCATGACTGCAGAGATCAATATACAGAAGATTTTC
TTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTGAGTTCTGGACCGAAGCTCTATATTG
CACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCTCCAAGCAAGTTGGGCGGGAAGATGA
CTAGTGCATTAGATAATAACGATCTAGCTGATCTGGAACTTTTGCTTTCAGATGGTGAAT
CTCTAAATGCTCACACAGCCATCATATCAGCGAGGTGTCCTAAGCTGTTGCCATCTGTAA
AATATCTACTTGGCAGCGATGAAAAAGTTAAAGATGAATGGGGAAAATCAGTGTACCGAG
TTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTGAAGAAGATTTTGGAGTACACATATA
CTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAACCAGTAAGGACACTTGCGAAGTATT
GTCACCTGAAACCATTGGCAGAAATGCTTCAGAAAGAGCAACCCAGATGGAACTCCGATT
ATGCCAGATATGATCTTAGTGCTGCACTTGGACCTGTTGAGCATTCATTCTCGGATATAA
TTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGTCACCATGGGTCGTGCCAATTGTCAA
CCCCGCACGTTCATAGCCATAAAATCGTGCTGACCATGAGCTGCGATTACCTCCGGGCAT
TATTTCGATCCGGGATGCATGAGAGGTGAGCCTTTTGATCCTTCCTATAATGCAACAAAG
TACAGACGGTTTATGCCAACATTTCCACAAATGGTATTCGATGCGTGCTTCATGCGTCTG
ACGAGAACCACGCCTGCAGCTTCTCCGACGTTATCAGGGTTCCGCTCGGGTGGCAAGCGC
TGGACAAGCTGGCTCACTGGTTCTACTCGGGCGAGCTGCCGAAAGCCGCCGTCGACTGCC
GATGGAACAACCTGGGCAGCGACGAGCAGCGCGCCCACCTGAACGCCTACGCGGAGCTGT
CGTCCCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAAGGAGGAGAGCCTCGTCGCGGCGT
CGTCCCTCCTGGAGTCGAGCACGAGCGCCGCCGCGGTCGGGTTCGTCGCCTTCGCGGCCA
GCCTGGGCCAGTGGGAGATGGTGGACGCCGGCGTCCGGAGCGTGGCGCACCTGTACCCCC
GGCTCCGGGACTCCGGCGGGCTGGAGCGGCTCGACGACGAGCTGCTCAACATGCTGCGCA
CCGAGTACGTCCGCTACTCGCAGCACGGAGGCAGGCAGAGGTGACTGAATGATACGTACG
TACATGGGGGACCTGAATGCGCGTCGCCGTGCGCTATGTAGATCCCCCCCCAGGGATTGC
TGCCATGCTTTCTTCACAGAGAATAATGTGCAATGTAAGTAGTAGCATTATCGTCTGGGT
TGCCAGAGCGGAGAGCTGTTTGTTGCTCCTGCCTGCATGGCGCACATGGTCACGCGCAAA
GGTGCAGGTATCGGAGGACCGACCGGCCTGCTGACACGCACACGCCGCGCCGATC