Exon Structure of HORVU7Hr1G106780.2

ChromosomeExonStartStopDirection
chr7H1620784534620784487+
chr7H2620784789620784698+
chr7H3620785405620785279+
chr7H4620786382620785866+
chr7H5620786624620786494+
chr7H6620787133620786727+
chr7H7620788394620787261+
chr7H8620788805620788653+
chr7H9620789364620788920+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +1 0.0 658 343/513 (67%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR
+1 1e-69 249 145/362 (40%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +1 0.0 1512 780/992 (79%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3054 bp)

>HORVU7Hr1G106780.2 3054 150831_barley_pseudomolecules
ATGCGCCCCGCGGCCGGGAAGGAGAAGGGCAGGAGGAAGGGCGGCGGCGCCGGCGCCGGC
GCCGGGGAGCATCTCCTCACCGACCGCGTCCTCTCCCTCCGCGCACGCCTGCACGACGCC
CTCTCCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGCAAAAAAATGGCAGTCTACTGAT
GCTGGAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTTTCTCGGTTGTTTGTCAACT
GAAATGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGATATTCTCGTACTCTTGGAA
GGTGTTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAG
TTAGTTTCCAGCATAGGCAATTCGATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCC
CTCTCATGCCAGTTGTCGGCACACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAATA
AACTGCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAA
ACCTTGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTT
GATGTCCATCCACTGAGTTATCTGACCGAGATGATATCACTGCTAAGAACCATACTGTGG
ACTTGGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCA
CATTACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCT
TTAGCTTTATGTGGCCATGGAGCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAG
ATTTGTGAGCTTGTGGGGACGTCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTC
TGCCATGTTCTTTTGAGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAG
CCTATTGTTGAAGGCATAATCGATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAACA
GAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCTTT
TGGTCTAATGCCATTGATAAAGTATTATATACCATTCTTACGGGCCGCTGCCTCTCCTCG
CATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTATTTGATATGGTTTCCAAAAACTTC
ATGGATATACATCCATACGTCTGGGATATACTTGGATATCTAGTGGTGCATTGCACTGAC
AAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTGCT
TGCTTGCTGGCCACAGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAGATGTG
CAGGAGCCGGCTTTGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGGATATATTCAG
TATGAGGCAAGTTTTAAACTTTCAGAAGGTCTTCCGTATTTGGGTGATGGCTATTTGAAC
GTTCTATTGTCATCATTAGAATCAAATGCTACGAGAAGTGTTGCCACATCTTTTGACAGT
TTCAAAATTATGACCAACCTCATGAACCTAGCATGTTTGGTGCTGTCACGACCTTACCAT
AATCTCCTGAACAAGAGGAATCCTATAGATGTGTTGTCCACCATTATCAAGGAATCTCTC
CACAATCATATACATATTACGAGGTCAAAAGTCACTTCCCATCTGCATTTTTGTTTTGAT
GGAAGTTCATGCTGTTGCTATCTCGGTGAAGAGTGGGAGGGTGAAAACATAGTTTTATTC
TACGGTCTTGTTGTGCTGTTTAATCTTATGAGGAGCACTACTTTAGTTTGTGTTCAGTGT
AAGAGGAAGTTGGATGTTGGAAATCTGTGCCATGACTGCAGAGATCAATATACAGAAGAT
TTTCTTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTGAGTTCTGGACCGAAGCTCTAT
ATTGCACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCTCCAAGCAAGTTGGGCGGGAAG
ATGACTAGTGCATTAGATAATAACGATCTAGCTGATCTGGAACTTTTGCTTTCAGATGGT
GAATCTCTAAATGCTCACACAGCCATCATATCAGCGAGGTGTCCTAAGCTGTTGCCATCT
GTAAAATATCTACTTGGCAGCGATGAAAAAGTTAAAGATGAATGGGGAAAATCAGTGTAC
CGAGTTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTGAAGAAGATTTTGGAGTACACA
TATACTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAACCAGTAAGGACACTTGCGAAG
TATTGTCACCTGAAACCATTGGCAGAAATGCTTCAGAAAGAGCAACCCAGATGGAACTCC
GATTATGCCAGATATGATCTTAGTGCTGCACTTGGACCTGTTGAGCATTCATTCTCGGAT
ATAATTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGTCACCATGGGTCGTGCCAATTG
TCAACCCCGCACGTTCATAGCCATAAAATCGTGCTGACCATGAGCTGCGATTACCTCCGG
GCATTATTTCGATCCGGGATGCATGAGAGCTTCTCCGACGTTATCAGGGTTCCGCTCGGG
TGGCAAGCGCTGGACAAGCTGGCTCACTGGTTCTACTCGGGCGAGCTGCCGAAAGCCGCC
GTCGACTGCCGATGGAACAACCTGGGCAGCGACGAGCAGCGCGCCCACCTGAACGCCTAC
GCGGAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAAGGAGGAGAGCCTC
GTCGCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGCGCCGCCGCGGTCGGGTTCGTCGCC
TTCGCGGCCAGCCTGGGCCAGTGGGAGATGGTGGACGCCGGCGTCCGGAGCGTGGCGCAC
CTGTACCCCCGGCTCCGGGACTCCGGCGGGCTGGAGCGGCTCGACGACGAGCTGCTCAAC
ATGCTGCGCACCGAGTACGTCCGCTACTCGCAGCACGGAGGCAGGCAGAGGTGA