Introduction

The website provides access to the Tomato Reference Transcript Dataset SolLycRTD1. You can access data directly by searching for a particular sequence ID or by BLASTing a nucleotide or protein sequence against the Tomato Reference Genome or the SolLycRTD1 transcript sequences using the BLAST page. Alternatively, you can use use keywords to search the annotations of the translated proteins of the SolLycRTD1 transcripts via the Annotation Search page. The predicted genes have nomenclature based on the annotation from the Tomato M82-MAS Assembly.

Search for a Sequence by ID

Searching for a gene ID will return all the transcript models from that gene region:

BLAST Search
Use a nucleotide or protein sequence to find similar transcripts or genome sequence with the online BLAST search form.
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Annotation Search
Search the GO annotation of the SolLycRTD1 transcripts using keywords. The annotation was created using PANNZER.
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Bulk Download
Download datasets, including transcript sequences, GTF files, and annotation.
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