solarray - Potato Microarray Database

Source Transcript

DMT400013962

Source Contig ST4.03ch00
Source Gene DMG400005468

Available Data

|Microarray Probes|
|Microarray Signals|
|Homologues|
|Spud DB GBrowse|

solarray

Links

Probe CUST_50931_PI426222305 - General Information

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_50931_PI426222305	JHI_St_60k_v1	DMT400013962	AATAGTGATAAGGTCCGGATACATTCTAACCTACCCAGACTCCACTTAATGAAATTTCAC

All Microarray Probes Designed to Gene DMG400005468

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_50925_PI426222305	JHI_St_60k_v1	DMT400013961	GGTGCATTTGGCAAGGAAAGTGTAAACGATCTAAGAAAGTTTTATGGACTTATAAGGATA
CUST_50931_PI426222305	JHI_St_60k_v1	DMT400013962	AATAGTGATAAGGTCCGGATACATTCTAACCTACCCAGACTCCACTTAATGAAATTTCAC

Microarray Signals from CUST_50931_PI426222305

Treatment	Raw signal	Raw Std Err	Normalized signal	Normalized Std Err
Control 1h	9.55062	4.67811	1.00772	0.449844
ABA 1h	8.91358	2.84887	1.19896	0.46556
ACC 1h	9.27505	3.7621	1.00049	0.465764
BABA 1h	9.21169	3.09719	1.15038	0.450497
Chitin 1h	13.0732	3.75785	1.69739	0.503818
Epi 1h	9.01716	2.93441	1.24312	0.487076
SA 1h	7.22633	2.9332	0.892755	0.371101
Me-JA 1h	9.53748	3.03101	1.42898	0.53389
Control 6h	9.8775	4.71537	1.0284	0.693323
ABA 6h	19.0686	7.53199	1.80811	1.13826
ACC 6h	11.5955	3.72986	1.28784	0.410366
BABA 6h	6.17091	3.41565	0.707274	0.391566
Chitin 6h	6.66036	3.35684	0.799543	0.407676
Epi 6h	12.2427	4.85141	1.18377	0.493387
SA 6h	7.33701	3.21724	0.900422	0.441826
Me-JA 6h	6.64047	3.05667	0.847614	0.400376

Source Transcript PGSC0003DMT400013962 - Homology to Model Species (BLASTX to E-value < 1e-50)

Database	Link to BLAST Hit	Frame	E-value	Score	% Identity	Description
Tomato (ITAG)	None	-	-	-	-	-
TAIR PP10	AT2G46620.1	+3	7e-162	479	271/493 (55%)	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:19139071-19140546 REVERSE LENGTH=491

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400013962

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