Probe CUST_2144_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_2144_PI426222305 | JHI_St_60k_v1 | DMT400072323 | GAAGAACTTACTTAAACCGCGTAAGTCTATGCAGACTCTCATGAATCAGGTGTTTCTATG |
All Microarray Probes Designed to Gene DMG400028144
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_2144_PI426222305 | JHI_St_60k_v1 | DMT400072323 | GAAGAACTTACTTAAACCGCGTAAGTCTATGCAGACTCTCATGAATCAGGTGTTTCTATG |
| CUST_2444_PI426222305 | JHI_St_60k_v1 | DMT400072322 | GTTGGATTCCAGGAATTTATTTTAGAATAATATTATCTATGGAGCAGCCTATGTCCTCTG |
| CUST_2576_PI426222305 | JHI_St_60k_v1 | DMT400072324 | GCAACTAATAATGGACTTTGTATTCTCAAAATTTTGAAGGGCCGGATTATGCTACCATTG |
Microarray Signals from CUST_2144_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 7.95022 | 2.98167 | 1.35897 | 0.596666 |
| ABA 1h | 8.17336 | 2.8487 | 1.63302 | 0.644678 |
| ACC 1h | 5.75566 | 3.35929 | 1.03076 | 0.59745 |
| BABA 1h | 5.37035 | 3.11485 | 1.03013 | 0.596581 |
| Chitin 1h | 5.03092 | 2.92864 | 1.07585 | 0.597894 |
| Epi 1h | 5.43011 | 2.9101 | 1.18342 | 0.622547 |
| SA 1h | 5.09845 | 2.95522 | 0.918895 | 0.532529 |
| Me-JA 1h | 5.14251 | 2.98987 | 1.19162 | 0.67281 |
| Control 6h | 5.18266 | 3.0048 | 0.959867 | 0.554625 |
| ABA 6h | 5.87536 | 3.1351 | 1.01204 | 0.547917 |
| ACC 6h | 6.13348 | 3.62042 | 0.969108 | 0.558625 |
| BABA 6h | 5.79511 | 3.36219 | 0.956972 | 0.55423 |
| Chitin 6h | 5.754 | 3.33318 | 1.00054 | 0.579377 |
| Epi 6h | 5.96841 | 3.49098 | 0.971334 | 0.56295 |
| SA 6h | 6.1551 | 3.20969 | 1.13798 | 0.606274 |
| Me-JA 6h | 5.14635 | 2.98103 | 0.958473 | 0.553943 |
Source Transcript PGSC0003DMT400072323 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc10g081840.1 | +3 | 4e-81 | 246 | 117/126 (93%) | evidence_code:10F0H0E0IEG genomic_reference:SL2.50ch10 gene_region:62130478-62134184 transcript_region:SL2.50ch10:62130478..62134184+ go_terms:GO:0005634 functional_description:Nuclear transcription factor Y subunit A-1 (AHRD V1 ***- B6TAR1_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B |
| TAIR PP10 | AT5G06510.1 | +3 | 2e-28 | 112 | 68/166 (41%) | nuclear factor Y, subunit A10 | chr5:1985439-1986591 FORWARD LENGTH=269 |