Microarray Probes on PGSC0003DMT400094545
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_991_PI426222305 |
JHI_St_60k_v1 |
ATGAAGTGGGGGAATCTGATAGAGCAAGCAAGTTCTGCTGGTTCAGACACTACTCTCATT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400094545
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400094545 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g089720.1 |
+1 |
0.0 |
843 |
419/434 (97%) |
evidence_code:10F0H1E0IEG genomic_reference:SL2.50ch02 gene_region:46036643-46038802 transcript_region:SL2.50ch02:46036643..46038802+ go_terms:GO:0016798 functional_description:Endo-beta-1 3-glucanase (AHRD V1 ***- B5THH0_PNECA); contains Interpro domain(s) IPR005200 Glycoside hydrolase, family 81 |
| TAIR PP10 |
AT5G15870.1 |
+1 |
0.0 |
643 |
314/448 (70%) |
glycosyl hydrolase family 81 protein | chr5:5182641-5184878 REVERSE LENGTH=745 |
Transcript Sequence (1302 bp)
>PGSC0003DMT400094545 1302 pgsc_dm_v3.4
ATGCTGGCTCATCCCCTCCATCTTCAGCTCCTTTCTGCTGTGGATAGCTCGGTAACTGTC
TTGGAGGGATTTAAGTACAATAGTATTGATGGTGAGCTTGTTGGTGTTGTTGGAGACTCA
TGGATATTGAAGAGTGACCCTGTTTCTGTAACATGGCATTCCATTAAAGGTGTTAAGGAG
GAGGCATGTTTAGAAATAATTGATTCGTTGAATAAGGATGTTGCTGCCTTGGATTCAAAG
GGAGTATCTACAACATCATCTTATTTTTTTGGAAAATTGATTGCAAGAGCAGCAAGGCTG
GCATTGATAGCTGAAGAGGTTTGTCACCTTGATGTTATCCCGGCAATCCGCAAATTCTTG
AAGGATACAGTTGAACCATGGTTGGAGGGGACTTTTCAAGAAAATGGTTTCTTTTATGAA
TCAAAATGGGGTGGAATTGTGACTAAGCAAGGGGCGTTGGATTCGGGAGCTGACTTTGGT
TTTGGGGTCTATAATGATCACCATTTTCATATTGGTCATTTCCTTTATGCAATTGCAGTG
CTAGCCAAGATAGATCCCATCTGGGGGAGGAAGTATAAGCCACAAGCTTATGCACTTATG
GCGGATTTTATGAATTTAAGCAGGCGATCAAATTCAAAGTATGCCCGGTTGAGGTGTTTT
GACTTGTGGAAGCTGCACTCTTGGGCTGGAGGATTGACAGAGTTTGCTGATGGACGAAAC
CAGGAGAGCACAAGTGAAGCAGTTAATGCATACTATTCAGCAGCTTTAATGGGTTTGGCC
TATGGGGATACCCATCTTGTTGCCATTGGATCGACCCTTTCAGCTTTAGAGATTCATTCT
GCACAGACTTGGTGGCATGTGAAAGAGGGAAGCACTTTATATGGGGAAGAATTCACAAAA
AACAACAGGGTGGTGGGTGTTTTATGGTCTAACAAAAGGGATAGCGGCCTTTGGTTTGCT
CCACCTGAATGGAAAGAGTGTAGACTTGGAATTCAGGTCTTACCAATATTGCCCATTACT
GAACTTCTGTTTTCAGACGTGCAGTTTGTGAAGCAGTTGGTCGAATGGACACTGCCAGCT
CTGGCAAGGGAAGGGGTTGGGGAAGGGTGGAAAGGGTTTGTGTATACTTTGGAAGCAATA
TATGATAAAGTGGGTGCTCTAAACAAAACTAGGAGCTTAACTGGGTTTGATGATGGAAAT
TCTCTTTCAAATCTTCTATGGTGGATTCATTCTAGAGATGATGAAGTGGGGGAATCTGAT
AGAGCAAGCAAGTTCTGCTGGTTCAGACACTACTCTCATTGA
