Microarray Probes on PGSC0003DMT400083788
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_23939_PI426222305 |
JHI_St_60k_v1 |
GAGCCATTTGTTGTTTAATTCTACTTTGTTTCTGTTGGCATGAAGACTGTTGTGTGATTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400083788
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400083788 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G58120.1 |
+1 |
9e-55 |
192 |
158/396 (40%) |
BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21520962-21522224 FORWARD LENGTH=420 |
Transcript Sequence (1585 bp)
>PGSC0003DMT400083788 1585 pgsc_dm_v3.4
GTTCTTGTAGCACAAGGTACGATCAGTTTTTACAGACTCTTCCGATCGGTTTGTTGTAAA
AGCATGGATTTTGGTCTTGGGTATTGCCCCAAAAGAGGGGAAATCAAGGGGAATCATTTT
CCCGAGTTGAAAATTGGGTTGAATCAAGACGCCGTTTTGATTATTAAGCTACCAGATTCG
AGGGCTTTAAGGATTATGTCACGGTCTTTGTTCTTTGCAATGGTTCTTTTCATATTGCCG
TCAATTGGGTCCATACTAAGAGGTTCATTCGATGTAATTGACGATTCTTATGTGAATTCT
GATGGGAGGGACTTCAATGTGTTGCATAATCTTTTTCGCGATTTGGCAGATGAAGGCCTT
GTTAAGAAGGGGCATAAAGGACTTGTTTTGAGTTCTGAGAATGATCATTTGGTCAAAGAT
TTGGAATTGTTGAATGACAATGTGGTTGATTTGGTGCTTGATTCGGATATGGATTACAAG
AATTCGATTCCAAATGAGACATTCGATTTTGCAATTGCTCAGACTGAATGGAACAGTAAG
TTCATTGATCGGGTGCTCAAGATTGGTGGCATTGTTATAACTCAACTCACCAATGATCCT
TTAGCTGAGCTTAAAGCTCTAGCAAACTACAGAATCGTGTATATTCGACGATTTGACAAG
ACTTTGGTGGGAGTTAGGAAAACTGGGGTACGAAATGCTGAGCTGAATTCACAGAAAAAG
GACATTGTTTGTGGAAGCACACCTGAGGCTAAGAAAGTTGCATTGAAAGGATTAGAGGAT
GTGTTGCTCGAACCGCCAAAAAGGGCATTGCTGAAATCATTTTCAAGGAAGATGAAGTTT
CTTCCTGAGTTGTTAGGTGATTCTCTTGAGAATTACCCTCGAAGAGTCTTCATTTCTGAT
GAGAAAAATGGGGTAACAGAATGGTTTAAGAGGAGCTACCCTGCAAATAATCAAGATTTC
GAGATTTACAACTTGGATGTTGAAATCCAAGAGTCAGAGCAATCAGGGGATGGAGTAGCC
TTAGTTGGGGCAGCAGAATGGTTGAGCAAAAATGTGAAGGAAGAGGACTATGTTGTGATG
AAGGCAGAAGCAGAAGTGGTGGAGGAAATGATCAAGAAGAAAGCAATATGTTTGGTAGAT
GAGTTGTTCTTGCACTGCAGAAACCAATTGGAAGAAGTTGATAATGATGATGATGAAGAG
GAAAATGGAAGCCAAAAGAGGGCTTATTGGCAATGTTTGACATTGTATGGGAAGTTAATA
GATGAAGGAGTTGCAGTGCACCAATGGTGGAGTTGAATCTAAGACACCTGATTTAGCTTT
GTCCTTTATCAGTCTCTTGTTATTGTTGCTCATTTCATGTATCATGTGGTCAGTGGTCAT
CAGTGGCTTTGGCTTTCCTGTTTGAGCCATTTGTTGTTTAATTCTACTTTGTTTCTGTTG
GCATGAAGACTGTTGTGTGATTAATTTAATGTTTTTCATCTTCTATCCTTTTATTTAAAA
GTTGGGATCTTTGGCATCTTCATATATATATATTCCTATTTGCTACATGTATTAAAATAA
AGGAAGGGAATGATTAACAGGGTCC
