Microarray Probes on PGSC0003DMT400082716
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_10048_PI426222305 |
JHI_St_60k_v1 |
CTGTTAGAGATGCTATATCAAAGATATTAGCCTGTGTCATAAAGGTGCTTCAAGAATGTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400082716
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400082716 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G11760.1 |
+3 |
4e-91 |
292 |
152/278 (55%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3718529-3721123 FORWARD LENGTH=702 |
Transcript Sequence (1197 bp)
>PGSC0003DMT400082716 1197 pgsc_dm_v3.4
TCCCCCTCTGATACTTGTGCATTTTTCACTAACAGATTGTAGAGAAGGCTGAACCTTCTG
CTGAATCAAGCCACCAAAATGAGCCTGCTTGGGAAGTAAAGGAATTACAGAGTAGGGATA
GGCAAACGAAGCTCAAAACCGAGGTCTTCTTTGCATCTTTCGACCAATGCAGCGATAAGG
CTGCTGGAGAGAGTGCATGCACAGCACTAGTAGCTGTTATCTCCCATTGGCTGCAATCGA
ATAGAGTTGCAATGCCCACGAGACCAGAATTTGATAACCTCATACTACAAGGTTCCACGG
AATGGAGAAAACTATGCCAAAATGATACTTACATCAATGATTTCCCAAACAAGCACTTTG
ATTTAGAGACTGTCCTGCATGCTGGTATTCGACCTTTATCCATCTCGCATGATCAATCAT
TTGTTGGATTCTTCATCCCGGAGAAATTTGACTCATTACAAGGGGTAATGTCATTTGATC
AGATATGGGACAAGATTAGTAGTGTCACAGATGGTATTGAATTTGAACCTAGAGTTTATA
TTATAAGTTGGAACGATCATTTCTTCGTATTGAAGGTGGAAGAAAATGCTTATTACATTA
TTGATACATTGGGAGAAAGGCTATATGAGGGTTGCAGCAAAGCATATATTTTAAGGTTTG
ACGATAACACAATGATATATGAGAATGTTGCAGAAGAGAAGTCACAGAAAAATGATACTA
AGGATAAGGAAGAGATGATATGCAAGGGGAAAGAATGCTGCAGAGAATTCATCAAGAGAT
TCCTCGCGGCTATCCCTCTAAAGGAACTGGAGGAGCAAGAGAAAAAGGAGACAATTTCTT
ATGTATCACTTCATCATCGATTGCAGATAGAGTTCAACTTGAGCTACTTGTTGTCTTCTT
CGTCATCGTCTTTGACATCATCACCTTTTTCTTCTTCTTCTACTACTTCTACACTTTAGA
ATGTACATTTAATTTGCCTAGTAGTGTGAATCTGTATTACAGTACTGCCAATTTGCAAAT
ATGAGCATACTGATTCGAGACACTGTACACTCTGATGCTGTTAGAGATGCTATATCAAAG
ATATTAGCCTGTGTCATAAAGGTGCTTCAAGAATGTTATGTATCATTAACATGAAACCAA
TATGAACACTAAACACCAAAATTGAAAACATTAATAAAAATTAGCATTTTCTCGGTA
