Microarray Probes on PGSC0003DMT400080319
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_48676_PI426222305 |
JHI_St_60k_v1 |
TGCTTTTTAGCACTGAGCAGTAGTTCCTGTGTTGGTAAATTTTGACTGATGAATCACAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400080319
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400080319 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G14790.1 |
+1 |
0.0 |
1290 |
680/1103 (62%) |
RNA-dependent RNA polymerase 1 | chr1:5094317-5097817 REVERSE LENGTH=1107 |
Transcript Sequence (3825 bp)
>PGSC0003DMT400080319 3825 pgsc_dm_v3.4
GAAATATTCTTTACTTAGTTCACTAGGGATTGACTCAACACTCCCCCCTCCCCTCAAGTC
TTCGTGTGTTGTGTAAATAAATTTGGTTGTCCTTCAGTTTCTGGCACTACTACTGGGTAG
TTTTATTTTTGCATAACTTCAGGAGGTATTCCAGTTGGTGATTAGCATTTGAACGTCGAA
CTGCACTTGGAATTTGGCTACATGGGAAAGACAATTCAGGTTTATGGATTCCCTGATCTT
CTGTCTGCAGAAGTGGTCAAATCATTCTTAGAGAAACATACAGGATATGGAACTGTATGT
GCATTGGAGGTTAAACAGTCCAAAGGAGGATCTAGAGCATTTGCCAAAGTTCAATTTGTC
GACAACATTAGTGCTGACAAAATCATCAATTTGGCTAGTAAGAGGCTGTATTTTGGCTCT
TCTTATTTGAAGGCTTGGGAAATGAAAACTGATATTGTCCAATTGCGGGCGTATGTGGAT
CACATGGATGGCATAACTTTGAATTTCGGATGTCAGATATCAGATGACAAGTTTGCAGTG
TTGGGAAGTACAGAAGTTTCAATTAAATTTGGCATTGGATTGAAGAAATTTTTTTTCTTT
TTATCTAGTGGTTCAGCTGATTATAAACTTCAGCTTTCATATGAAAATATATGGCAGGTT
GTGCTCCATCGTCCATATGGTCAAAATGCTCAGTTTCTCCTCATACAGTTATTTGGTGCT
CCTCGGATCTATAAGAGACTTGAAAACTCCTGTTATAGCTTCTTTAAGGAAACTCCTGAT
GATCAGTGGGTGAGGACGACAGATTTCGCTCCATCTTGGATAGGGCTGTCTTCTAGCTTA
TGTTTGCAGTTCCGTAGGGGTGTTCATCTTCCAAATTTCCAGGAAAGTTTTTTTCACTAT
GCAGAACGTGAAAACAATATTACTTTACAGACTGGTTTCACCTTTTTCGTCTCTCAAAAA
TCGGCTCTGGTTCCCAATGTCCAGCCTCCGGAAGGAATTGCAATTCCCTACAAGATATTG
TTCAAAATTAGTTCTTTGGTACAGCATGGATGCATTCCTGGGCCAGCATTAAATGTCAAC
TTTTTCCGATTAGTTGATCCTCAAAGGAGAAATGTTGCATGCATTGAGCAAGCCTTAGAG
AAACTGTACTATTTGAAGGAGTGCTGTTATGATCCAGTGAGGTGGCTGACTGAGCAGTAT
GATGGGTATCTCAAGGGTAGACAACCTCCAAAATCTCCGTCCATCAATTTAGATGATGGG
TTAGTGTATGTAAGAAGGGTCCTAGTAACACCATGCAAAGTTTATTTTTGTGGTCCAGAG
GTTAATGTTTCCAATCGGGTTCTCCGCAATTATTCTGAAGACATAGATAACTTTCTTCGT
GTTTCTTTTGTTGATGAGGAGTGGGAGAAACTGTATTCTACAGACTTATTACCAAAAGCA
AGTACTGGAAATGGTATCAGGACAAACATCTATGTGAGGATCCTATCAACTCTGCAGAAA
GGCTTTGTAATTGGTGATAAAAAATTTGAATTTCTTGCATTTTCATCGAGCCAGTTGCGG
GATAATTCAGTGTGGATGTTTGCATCAAGACCTGGCCTTACTGCAATTGATATAAGAACT
TGGATGGGTGATTTTTCGCAGATCAAGAATGTGGCAAAATATGCTGCCAGACTTGGTCAA
TCTTTTGGTTCCTCCAAAGAGACTTTGAGTGTTCTTAGGCATGAGATTGAAATTATTCCT
GACGTAAAGGTTCATGGAACCAGCTATGTCTTTTCTGATGGAATTGGTAAAATATCTGCT
GACTTTGCTCGTAGAGTTGCCTCAAAATGTGGCCTTCAATATACACCATCTGCTTTTCAG
ATTCGTTATGGTGGATATAAAGGTGTTGTGGCTGTTGATCCATATTCATCAATGAAGTTA
TCTTTGAGAAAGAGCATGTCGAAATATGAATCAGACAACAATAAGTTAGATGTCCTTGAG
TGGAGCAAATATCAGCCTTGTTTTCTTAATCGTCAACTGGTTACTCTCTTGTCTACACTT
GGAGTGAAAGATGATGTTCTCGAACAGAAGCAAAAGGAAGCTGTAGATCAGCTTGATGCT
ATCTTGCATGATTCTTTGAAGGCACAGGAGGCTTTGGAATTGATGTCTCCTGGAGAAAAC
ACTAATATTCTCAAGGCAATGCTAAATTGTGGTTATATGCCTGATGCTGAGCCCTTTCTT
TCAATGATGCTGCAAACCTTCCGCGCATCGAAGTTGCTCGATTTGCGGACTAGATCAAGA
ATATTTATTCCAAATGGAAGAGCAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAA
TATGGTCAGGTGTTTGTTCAGTTTACTGGTTCTGGACATAGAGAATTTTCTGAGGATTTA
CATCCATTTAATAACAGCAGATCCACCAACTGTAATTTCATTCTCAAGGGAAATGTGGTT
GTTGCAAAAAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAGGGCTGTAGATGTT
CCAGCGCTGCACCACATGGTAGATTGTGTTGTATTCCCCCAGAAAGGAAAAAGACCTCAT
CCGAATGAATGTTCTGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGCTGGGATCAA
GACATGATTCCGCCAAGGCAAGTCCAAGCGATGGAATATCCTCCAGCACCCAGCATACAG
TTGGATCATGATGTCACAATTGAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAAT
GACAGTTTGGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATG
GCCATGAGTGATCCATGCAAAAAACTTGCTGAGCTCTTTTCAATTGCAGTGGACTTTCCA
AAGACTGGTGTTCCTGCTGAAATACCATCTCAGTTGCGCCCTAAAGAATACCCAGACTTC
ATGGATAAGCCGCCAGACAAGACAACCTATATCTCAGAAAGAGTTATTGGAAAGCTTTAC
AGGAAAGTGAAGGACAAAGCTCCTCAGGCTAGCTCTACTGCGATATTCACAAGGGATGTT
GCAAGGAGATCATATGATGCTGATTTGGAAGTTGATGGATTTGAAGATTACATTGACGAA
GCTTTTGACTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGC
ATAAAAACGGAGGCTGAAATACTTAGTGGTGGCATCATGAAGACATCAAAAACTTTTGAT
CGCAGAAAAGATGCTGAGGCCATTAGTATTGCTGTGAGGGCCTTGAGGAAGGAAGCAAGG
ACCTGGTTCAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCGGCTTGGTAC
CACGTTACATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGATCAT
TTCATTAGCTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGAGAAAGCA
CTTAACAGGCCAGTTCTCAATTTGTCATCTCTCAGGGCTCAGCTGAGTCACAAATTAGTG
TTGAAATGAGATTTCAGTCAAGCGTTAAGCTGATATATATATATATATATAAATGTAATA
GGGGTGTGATCATAAGAAAACTGCTATGCGTTGTTAACAACCTTTTGTATTCAAAACTGC
ATGAACCTGTAACATATATGCAGTATCTTAGAAACTGCTGTACAGCTAAGTACTAATATG
TATGTGGTTTGAGTTTTATCTCTCTTCTCAACATAGTTCATATTATGCTTTTTAGCACTG
AGCAGTAGTTCCTGTGTTGGTAAATTTTGACTGATGAATCACAAA
