Microarray Probes on PGSC0003DMT400080295
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_48699_PI426222305 |
JHI_St_60k_v1 |
CCTGTAACATATATGCAGTACTCCTAGAAACAGCTGTACAGTTAAGTACTAATATGTATG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400080295
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400080295 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G14790.1 |
+2 |
0.0 |
1284 |
683/1109 (62%) |
RNA-dependent RNA polymerase 1 | chr1:5094317-5097817 REVERSE LENGTH=1107 |
Transcript Sequence (3749 bp)
>PGSC0003DMT400080295 3749 pgsc_dm_v3.4
ATTTACTTAGTTCACTAGGGATTGACTCATCACTCCCCTCTCCCCTCAAGTCTTCGTGTG
TTGTGTAAATAAATTTGGTTGTGCTTCAGTTTCTGGCACTACTACTGGGTAGTTTTATTT
TTGCATAACTTCAGGAGGTATTCCAGTTGGTGATTAGCATTTGAACGTCGAACTGCACTT
GGAATTTGGCTACATGGGAAAGACAATTCAGGTTTATGGATTCCCTGATCTTCTGTCTGC
AGAAGTGGTCAAATCATTCTTAGAGAAACATACAGGATATGGAACTGTATGTGCATTGGA
GGTTAAACAGTCCAAAGGAGGATCTAGAGCATTTGCCAAAGTTCAATTTGTCGACAACAT
TAGTGCTGACAAAATCATCAATTTGGCTAGTAAGAGGCTGTATTTTGGCTCTTCTTATTT
GAAGGCTCGGGAAATGGAAACTGATCTTGTCCAACTGTGGGAGTATGTGGATCACATGGA
TGGCATAACTTTGAATTTCGGATGTCAGATATCAGATGACAAGTTTGCAGTGTTGGGAAG
TACAGAAGTTTCAATTAAATTTGGCATTGGATTGAAGAAATTTTTTTTCTTTTTATCTAG
TGGTTCAGCTGATTATAAACTTCAGCTTTCATATGAAAATATATGGCAGGTTGTGCTCCA
TCGTCCATATGGTCAAAATGCTCAGTTTCTCCTCATACAGTTATTTGGTGCTCCTCGGAT
CTATAAGAGACTTGAAAACTCGTGTTATAGCTTCTTTAAGGAAACTCCTGATGATCAGTG
GGTGAGGACGACAGATTTCGCTCCATCTTGGATAGGGCTATCTTCTAGCTTATGTTTGCA
GTTCCGTAGGGGTGTTCATCTTCCAAATTTCCAAGAAAGTTTTTTTCACTATGCAGAACG
TGAAAACAATATTACTTTACAGACTGGTTTCACCTTTTTCGTCTCTCAAAAATCGGCTCT
GGTTCCCAATGTCCAGCCTCCGGAAGGAATTGCAATTCCCTACAAGATATTGTTCAAAAT
TAGTTCTTTGGTACAGCATGGATGCATTCCTGGGCCAGCATTAAATGTCTACTTTTTCCG
ATTAGTTGACCCTCAAAGGAGAAATGTTGCATGCATTGAGCAAGCCTTAGAGAAACTGTA
CTATTTGAAGGAGTGCTGTTATGATCCAGTGAGGTGGCTGACTGAGCAGTATGATGGGTA
TCTCAAGGGTAGACAACCTCCAAAATCTCCGTCCATCAATTTAGATGATGGGTTAGTGTA
TGTAAGAAGGGTCCTAGTAACACCATGCAAAGTTTATTTTTGTGGTCCAGAGGTTAATGT
TTCCAATCGGGTTCTCCGCAATTATTCTGAAGACATAGATAACTTTCTTCGTGTTTCTTT
TGTTGATGAGGAGTGGGAGAAACTGTATTCTACAGACTTATTACCAAAAGCAAGTACTGG
AAATGGTATCAGGACAAACATCTATGAGAGGATCCTATCAACTCTGCGGAAAGGCTTTGT
AATTGGTGATAAAAAATTTGAATTTCTTGCATTTTCATCGAGCCAGTTGCGGGATAATTC
AGTGTGGATGTTTGCATCAAGACCTGGCCTTACTGCAATTGATATAAGAACTTGGATGGG
TGATTTTTCGCAGATCAAGAATGTGGCAAAATATGCTGCCAGACTTGGTCAATCTTTTGG
TTCCTCCACAGAGACTTTGAGTGTTCTTAGGCATGAGATTGAAGTTATTCCTGACGTAAA
GGTTCATGGAACCAGCTATGTCTTTTCTGATGGAATTGGTAAAATATCTGCTGACTTTGC
TCGTAGAGTTGCCTCAAAATGTGGCCTTCAACATACACCATCTGCTTTTCAGATTCGTTA
TGGTGGATATAAAGGTGTTGTGGCTGTTGATCCATATTCATCAATGAAGTTATCTTTGAG
AAAGAGCATGTCGAAATATGAATCAGACAACAATAAGTTAGATGTCCTTGGGTGGAGCAA
ATATCAGCCTTGTTATCTTAATCGTCAACTGGTTACTCTCTTGTCTACACTTGGAGTGAA
AGATGATGTTCTCGAACAGAAGCAAAAGGAAGCTGTAGATCAGCTTGATGCTATCTTGCA
TGATTCTTTGAAGGCACAGGAGGCTTTGGAATTGATGTCTCCTGGAGAAAACACTAATAT
TCTCAAGGCAATGCTAAATTGTGGTTATATGCCTGATGCTGAGCCCTTTCTTTCAATGAT
GCTGCAAACCTTCCGCGCATCGAAGTTGCTTGATTTGCGGACTAAATCAAGAATATTTAT
TCCAAATGGAAGATTAATGATGGGATGTTTGGATGAATCCAGAACCTTGGAATATGGTCA
GGTGTTTGTTCAGTTTACTGGTTCTGGACATAGAGAATTTTCTGAGGATTTACATCCATT
TAATAACAGCAGATCCACCAACTGTAATTTCATTCTCAAGGGAAATGTGGTTGTTGCAAA
AAATCCATGCTTGCATCCTGGTGATATTCGTGTTTTAAGGGCTGTAGATGTTCCAGCGCT
GCACCACATGGTAGATTGTGTTGTATTCCCCCAGAAAGGAAAAAGACCTCATCCGAATGA
ATGTTCTGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGCTGGGATCAAGACATGAT
TCCGCCAAGGCAAGTCCAAGCGATGGAATATCCTCCAGCACCCAGCATACAGTTGGATCA
TGATGTCACAATTGAGGAAGTTGAAGAGTACTTCACCAACTATATTGTGAATGACAGTTT
GGGAATCATAGCAAATGCCCATGTCGTATTTGCAGACAGAGAACCTGATATGGCCATGAG
TGATCCATGCAAAAAACTTGCTGAGCTCTGTTCAATTGCAGTAGACTTTCCAAAGACTGG
TGTTCCTGCTGAAATACCACCTCAGTTGCGCCCTAAAGAATACCCAGACTTCATGGATAA
GCCGCCAGACAAGACAACCTATATCTCAGAAAGAGTTATTGGAAAGCTTTACAGGAAAGT
GAAGGACAAAGCTCCTCAGGCTAGCTCTACTGCGATATTCACAAGGGATGTTGCAAGGAG
ATCATATGATGCTGATTTGGAAGTTGATGGATTTGAAGATTACATTGACGAAGCTTTTGA
CTACAAAACTGAATATGACAACAAGCTGGGTAATTTAATGGACTACTATGGCATAAAAAC
GGAGGCTGAAATACTTAGTGGTGGCATCATGAAGACATCAAAAACTTTTGACCGCAGAAA
AGATGCTGAGGCCATTAGTATTGCTGTGAGGGCCTTGAGGAAGGAGGCAAGGACCTGGTT
CAAGAGGCGTAATGATATAGATGACATGTTACCAAAGGCTTCAGCTTGGTACCACGTTAC
ATATCATCCTACATATTGGGGTTGCTACAATCAGGGGTTGAAAAGAGATCATTTCATTAG
CTTTCCCTGGTGTGTTTATGACCAGCTAATCCAGATTAAGAAGGAGAAAGCACGTAACAG
GCCAGTTCTCAATTTGTCATCTCTCAGGGCTCAGCTGAGTCGCAAATTAGTGTTGAAATG
AGATTTCAGTCAAGCGTTAAGCTGATATACATATATATATATATATATAATGTAATAGGG
TGTGATCATAAGAAAACTGCTATGCGTTGTTAACAACCTTTTGTATTCAAAACTGCATGA
ACCTGTAACATATATGCAGTACTCCTAGAAACAGCTGTACAGTTAAGTACTAATATGTAT
GTGATTTGAGTTTTATCTCTCTTCTCAAC
