Microarray Probes on PGSC0003DMT400080080
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2687_PI426222305 |
JHI_St_60k_v1 |
ACCAGAAGATGTTATATGTGCTTTCATGCCGTCATTTACCATATGCTAAAACCAGTGGTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400080080
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Source Transcript PGSC0003DMT400080080 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G09970.1 |
+1 |
4e-17 |
80 |
62/235 (26%) |
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:6246038-6247597 FORWARD LENGTH=250 |
Transcript Sequence (1078 bp)
>PGSC0003DMT400080080 1078 pgsc_dm_v3.4
CTTTCGTACTATTCTATCCCGCAATAGATTCAGAAGTGAGTGACAAATCTTTTGTGTGAA
TGTAATCGAAAGCAGTATGATTCAATGGAATTGAAGCTATGTCAATCCTCTCATCCATTG
CCCTGTAAATCCTCTTCATTTAGAGCTAACTCCACATACAAGCACTTCAGTTTACTTCCT
AAGAGGTGTAAATATCATATTCAGGAGCTTTTCTCAAATGGTCAACAATGGAGCAGTTCC
ATTCAATTCTTGGTTCATGTGGTGAAAGAGGATGAAACGTTGACTTCACTTTCAAAGTTA
TATGGAGTGCCTATTTATGAAATTGCTGCTGCTAATAAGGAAATTATTGATGTTAACCTT
GTTTTTGAAGGGCAACATCTCAACATCCCTTCCTATGTTACACCTTACTCACAAACGAAT
CAACGAGAGAAGATTAGATTACCTAAAATTGATGTGTCTGAAACAAGCCAACGCTTCAAA
CTCTGTGGCAACGATATCAACCAGAAGATGTTATATGTGCTTTCATGCCGTCATTTACCA
TATGCTAAAACCAGTGGTTATTTTCTAGTTCTGGTTCCTCTGATAGGCTTTTGCATCAGA
TGCATAATGAATGCCTTTCACCATAGAGTTGCTAGAAATAAATTGCAAGATGTTCGTCAG
GCATCTGGAAGCATGAGATGGAAATTAGCTCTTCGTGATTTGAGCGATCCAGATGCATTA
TATTCTGATTCAAGACCTGAAATTGAGAATGTCACCGATGATAGAGAACATCTCCAATCT
GAAGAGCTTTCACGTGCTTATGCAAAACTGGACGGCGATTATCAGAAGTTCCTATCGGAA
TGTGGGATGAGTAAATGGGGCTACTGGCGTGGTGGTACAGATGAATAAGAATTCTGGAGT
ATGACTGTTGCTTTACAAATTACAATTTCTCTCCATTTATTGATCAATGTATATAAAGCA
GGTTTATGGTGAATGTACATAGTACAGGCTCAGTTTATCAAATAGTATTGCCTAGATGAA
ATCATTGAAATCTGTTTGATTTTCTACCTATTCCTTTCATCTGAAATTAAGATTTCTT
