Microarray Probes on PGSC0003DMT400076999
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_39956_PI426222305 |
JHI_St_60k_v1 |
CCTAGAATTGTGAAGAAAGTTGGGTTGGAATTACAAGTTCTTTTCGATTATGCGTTTAGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400076999
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400076999 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G11890.1 |
+3 |
2e-24 |
102 |
92/239 (38%) |
FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3831770-3832633 FORWARD LENGTH=287 |
Transcript Sequence (1452 bp)
>PGSC0003DMT400076999 1452 pgsc_dm_v3.4
GATAAATCTAAAAGAAAAAAAGAAGAAGCAAAATAAGCAATGCAAGCCCCAAGCCAGCCA
AGAGATTCCCATTTCTTGGTGTGGTGTAAGTATCCCCATTTGCCCCCACTTTAGTGGTTT
ATAGTCTATCCCTTGAACACTTTCAACCAAATCAACAAACAAAAAAAAATAATCTTTTGA
ACACAAAAGAAACTTTGACACTTTACTTCACATTTTTTCATTTTCTTCCCCAAAACAAAC
AAAACCAATATGTTTTCTAAACTCTTGCAATAATCATAATCTTCTTATTCTTGAACTTCT
AGTTCTTTGGTCTTTTACATCTAAAACTAATTTAGTTTCTTTCAACACAAATAATGACGG
ACAGAGTCTACCCTTCAGCTAAGCCTAATGGCACTGCGCCTACTGCTACCACTGCCGCAA
ATCCAAACGCTGCTCCGGTGAAGAACCAGATGTACAACAACCCAAACCGTGTCCCTTACC
GACCGACACCAACAGCCTACCACCGACACAACCGTCGTCGTTGCAGCGGCCGGCGTTGTT
TTTGTATGTGTTGTTTTTGGTCTATCCTCATCATTTGCATCCTCCTCCTTCTTGCAGCTA
TTGCCGGTGCTATTTTCTACGTCCTTTACCATCCTCAACGGCCTACATTCTCAGTTTCTT
CACTCAAGATCTCTAATTTCAACCTCACTACTTCCTCCGACGACACAACCCATCTCACTA
CAAAATTGAACCTCACACTCTCAACCAAAAACCCAAACAAAAAATTGATATACAACTATA
ACACTATCTCTATTACTGCACTTTCAAATCAAGTTGTTTTAGCAAAAGGGCCGTTTCCGG
GATTCACCAGCAGTACAAATAACATTACGATTATACACTCGACTTTGTCGATGGTGTCGC
AAGTACTTGATGTTGATTCAGTTTCATCTCTAAAATCAGATCTGAAGAGAAAAGCTGGGT
TGCCCGTGACAATCTTGATGGATACTATGGTAGAAGTGAAAATGGACAAATTGAAAAGCA
AAAGGGTAGGGATTAGAGTAACGTGTGAAGGAATTCATGGATCGACACCAAAGGGTAAAG
CACCAGCTGTGGCATCAACAAATAATGCTAAGTGTAAGGTTGATCTAAGAATCAAGATCT
TGAAATGGACTTTCTAATTTCATCTCAATTTGGTTTGACTTTTTTTTTTTTTTTTTGGGT
TTTAAGTATAATCATAGTAATTTCTTTTGGGGTTCAAATTGACTCCTCTGTTTTTTTTTT
CTTCTTCTTTTGAGATTTGTTTGTAAACTTAAGAAGAGACTAGGAAGATTGCCAAAGTTA
AGTTGAGTTTTTTTCCTAGAATTGTGAAGAAAGTTGGGTTGGAATTACAAGTTCTTTTCG
ATTATGCGTTTAGTTAATTGTAGTCAGACTTAAATTCATTCAAGATCTCAATCACAAATT
TGCACTTTCTTG
