Microarray Probes on PGSC0003DMT400075403
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_7994_PI426222305 |
JHI_St_60k_v1 |
CACATCATCTTGCTACTAAAGGTAATTGATGAATGGTAGAGAAGAAGAAGAGCATGAGAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400075403
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400075403 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G76110.1 |
+2 |
1e-90 |
281 |
161/300 (54%) |
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr1:28555287-28557465 REVERSE LENGTH=338 |
Transcript Sequence (1260 bp)
>PGSC0003DMT400075403 1260 pgsc_dm_v3.4
TCTGTACATAACCGCTGCTTCAACACTTGTCTCAATAACTTTGATTTTTTCAATCTTCTT
CTTCTTAAATAACCCCAAATTATCCCATTTTTATTCATTACATCTTTTACATTTTGGTTC
TAAGTTTTTTTACCAACTCCATTGCTCTGTTTTTCTGGTTTCTTGATTTTCCGGCGAGTT
TTTACCGGTCTCCGGCGGTACCATGATGTCTCAGACAGGTTTTGTTCCTCCCGATGCTGT
AAAAAGAGAGATGAATCCTCAACCAATGGCGTCTCATGAGAAGATTGTGAATGATCCGAC
TCTGTTTAGGGAGTGTCTCAAGAATTTTCACTCTGTTGTTGGCGCAAAGGACTCGGTTCC
TGTGATTGGAGGGAAGGATCTTGATTTGCATGTTCTCTATGTTGAGGTGACTAAAAGGGG
TGGCTTTAACAAGGTAGTGGCAGATAAGAAATGGAGAGAGGTGAGTTCAGTTTTCAAGTT
TTCTCCAACAACAACAAGTGCTTCATATGCTTTGAGGAAACATTATTTCACTTTGCTTCA
TCACTTTGAACAAGTTTACTTTTTCAAACATGAAGTTCCTATGTTTGATAAATCTCCAGG
TTCATGCTTCCAAGCTGAAGGGAAAATTGATGCCAAATTTGACTGTGGCTACTTTGTGTC
CCTCAAAATGGGAAGTGAAATTCTCAATGGTGTACTTTACCATCCAAACCAACAAGCTCA
ACCATCTTCTTCCAAATTCGGTGCACAAAGTTGCAACGCGATTGTGCCTTACTACTCACC
ACCTCTCAACAATTCAGGACGGAGGAACAGGAGGAGGAGGAGGAACGGGGATCCTAATCG
CCCAAAACCTAATAGGAGTGGGTATAACTTCTTCTTTGCTGAAAAGCATTCAATGCTCAA
ATCTATTCATCCACATAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAA
TCTATCTCCTGAAGAAAAAATGGTTTATCAAGAGTATGGGGTGAAGGACAAGGAAAGGTA
CCAGAGGCAACTGAAGGAGTACAAAGAAAGCATCATGACCACATCATCTTGCTACTAAAG
GTAATTGATGAATGGTAGAGAAGAAGAAGAGCATGAGATAAACAATGTAAATGTTTGTGT
GGATCAAAACTTTGTTATAGCTTATGTAAGATAGTCTTAAACTATTTCCAAAACTGTAGT
TTAATTTCTCAAAACATTTGTTTACCTAAACTAATTCTCATGCTTATAAGATGGTCTTGC
