Microarray Probes on PGSC0003DMT400073980
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_40608_PI426222305 |
JHI_St_60k_v1 |
TCGGAGAAGTGAGTCTGATCTACAAGAAAAAATTTAGGTGTGAAGTTTGTATAGCTCATG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400073980
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400073980 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G29195.1 |
+3 |
5e-06 |
46 |
41/173 (24%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10202673-10203254 REVERSE LENGTH=193 |
Transcript Sequence (843 bp)
>PGSC0003DMT400073980 843 pgsc_dm_v3.4
ATAAACCCAAGATTTTCAAAGTCCAACATATGTATAAATTGCCAATTATCATCTATCTCA
AAACCAAGAAGAAGAAAGAAAAAAAAATGTATTGGTGTTTTTCTTTCAAAATTGGACACT
CTAATAAACTCATGACTATTAGAGTGGTGCATTTGAATGGCTATGTAGAAGATTTTGATC
ATCCTATTAGTGTTAGTGAAGTCATGGGAAAACTCCAAAAGCACTTTATTTTCACTCAAT
CCCAACTTTTATCCACTTGTTTACAACCTCTAAATCTTGATTACATGTTGCAACAAGGTA
ATATTTACTTCTTGTTACCTCATTCAACTTTTCAATCTAGTGTATCTCCTATTGATTTGG
CTCCAATTGCTAAAAGACTTAGCGGCATAGCCAAAAATCCCATGACGTATATTAAGGAAA
AGCCAAGCAAGAAAAAGCCATCGAATGGTACTACTAGCCAACGAGTTTTGGACTCAACGA
CTAGTAGCCCTAATCGGTTTTCAGATAAGGGTAAATGGGTCGATTCAGAGAAAGAACGAC
TTATAACCTATGGTATGGGACAACGGATGTCAACAAAGTCACCTAAATGGGAACCACTTT
TGAATACCATTAGAGAAAGATCATTTAATCGGAGAAGTGAGTCTGATCTACAAGAAAAAA
TTTAGGTGTGAAGTTTGTATAGCTCATGAAGAAAATTGTTAACTTTTGTATTCTCATCTA
TTTTTCTTTTTAATTATTCTAGTTGTCTTGTGAAGTCTCTTTAGAAGAAGAAGGTTAGTA
CTTTGATTTATACAAATTTCATTTGAACTTTTGTTAATGTTATATTACTAGTTACTAGTT
AAC
