Microarray Probes on PGSC0003DMT400072556
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2184_PI426222305 |
JHI_St_60k_v1 |
CATCAGTAACTGATTCCGAGGCATCGCATGATGGTTGGAAAATGAAGGACAATGGTAACA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072556
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072556 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g081770.1 |
+1 |
0.0 |
843 |
435/472 (92%) |
evidence_code:10F0H1E0IEG genomic_reference:SL2.50ch10 gene_region:62095810-62099028 transcript_region:SL2.50ch10:62095810..62099028- functional_description:cDNA clone J023119C16 full insert sequence (AHRD V1 *-*- B7F733_ORYSJ) |
| TAIR PP10 |
AT5G06440.4 |
+1 |
6e-124 |
374 |
207/439 (47%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3). | chr5:1964641-1966807 REVERSE LENGTH=486 |
Transcript Sequence (1419 bp)
>PGSC0003DMT400072556 1419 pgsc_dm_v3.4
ATGAAGGACAATGGTAACATCTCTCAGTACAGAAGTAGACTGGATCAGACGCTATCGTCT
GATGATCTTGTCGATTATGATAAGCTTAAGTCCCTTGTCAAGAATCAAATCCTATGCTCA
TCAGAATGTGATCTTCACGAATGTATTGACAATCTAGTAGATAGAAGAACCAAGGAAGTG
GCAAACTTCCTGAGCATGTTGAGGAGTGCATCAGTAACTGATTCCGAGGCATCGCATGAT
GGTTGGAAAGTAAAACAGGACAGTGAGGAGATTCGTGTTATGTATCGAGAGGGACCAGAA
GGCACTCCTTATCATACCCTCTTAGCTGAAGGTTATGTGGATGGTCCAATAGATGTTTGT
TTATGCATTTCATGGGAGGCAGAACTCTACAAGAAGTGGTGGCCACAAACTACAATTCCA
ACTTTTAAAATCGCGACATCTCAATGTTTGCAAAAGGTCAGAACTGGTGAACAGATATGT
TTAGTAAGGATGAAGCTCTCAAGGCCATTGTCAGCAAGGGAAGCTGTGGTACATTTATTT
GCATTTGAATACTTTCAAGATGGCCTTATAGTTGTGGTTGCCAATACTATCTCTGACTTA
GATAGTGTTGATAGAAGTACACATTGTTATTCCAAAGATGAGATACCGGATGTGCAGGAT
GTAGTACGAGTTGATCTTGTGGGAGGTTTTGCTCTACAAAAAGTTACTGATAATCGAAGC
TACTTCAGGACAATAGGAAATTTGGATATTAAACTGGACTTTATACCTCCAGCATTAATA
AATTTCGTGGCAAGGCAGCTCGTAGGTGGCGGTTTCAAGCTTTTTAAGAAGGAAGTAGCT
TCAGTTGCTAAAGGTGATGAAGACTTCAGCAAGGCTCTAAAGGATCCACTGTATGCTCGA
ATACGTGAAGCTCTTTACTCCGATAAAATACCTTTAGAACTTCAAGACATGAAGAAAAAT
GCAGTTCCTCTTGATGAAGAAACTAGAAGAAAGAATGATGAAAAATGTCCTGTGCAAAAG
GTTCATAGTGAAATCGAGGAGATTGAAGACGAAGCCTGTGAAAAGATCGAATATCAAAAT
CAGGATGACAGGAACATACATGATTCTCCAGTCAATCAAATTGTTCAGAAACCGAGCAAG
CATGAGAATGTTGGCATTAGCCCTGAGGTCAGACAAGCTTTAGTAACTTTGGATAAGGCT
ATTTCTATCATAAGGGAATATGGATGTAACCTCGAAATTAGGACAGTTCCAGACACTAAC
ATAATGTCAGTAGAAGGGGAGACATACAGTCTACAAGATTCAAAATCATCAGAAGCTGAT
AAGGATGGTAGAAACGTCGGAGATTTTGGTGTAATACCCAAACAGGAATTTAGAGAAGCA
ACCTCTTATGAACACAGAGATAGCTCTTGTTCCAGGTAG
