Microarray Probes on PGSC0003DMT400072510
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2219_PI426222305 |
JHI_St_60k_v1 |
CCTTCAAAAATGCACTTCTTTTAAGGATCCAACATGCTCCCAATGACATGATTGTTAATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072510
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072510 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g081420.1 |
+2 |
0.0 |
684 |
423/448 (94%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:61809625-61812997 transcript_region:SL2.50ch10:61809625..61812997- go_terms:GO:0005515,GO:0006468 functional_description:Receptor like kinase, RLK |
| TAIR PP10 |
AT3G03770.1 |
+2 |
8e-107 |
357 |
231/421 (55%) |
Leucine-rich repeat protein kinase family protein | chr3:945303-948436 REVERSE LENGTH=802 |
Transcript Sequence (3418 bp)
>PGSC0003DMT400072510 3418 pgsc_dm_v3.4
TTTCAATCTGTCTTGCTTTCCTTTTTAGTCTGTATAGAAAAATGTTTCTTTACCTTTTTG
GCAACTCTTCAGTTTCAACTTTACACACGACAAGTTTAAACCATGAGATTAAACGCATTT
TGGTACATTCTACATATCCTTAGCTTAGTTAAAGACCAAAAGATTCAAAAGTCGTTCTTT
ACTTTCTTGAATTCCGTGTAAAGTCAAAACCAGACAAGCAAATTGAAACAGAGGAAAGTA
CATTTTCTTGAATTGTTGTTATTCTAATAACTATGGATACAGAGTTTGATGTTTGCTTAC
TGAAATTTCATTTCAGCTGAAGTAGTGAAGAAGTGGCAACTAGAGTGTTTACAAGAAAGC
TCAAAAAAGTGTAAATTTCTCAGTTCTTTTTAGTCCTTTTTTGGTGATGGAAAAACATTT
AGGACTTAAAACTCTTCTAGTTTTGCTTGTTTTATTGCTCTCAATTAGCATCTCAGAGCA
ACTACAATCTTCTTCACAAGCAAATATTTTATCGAGAATTCGAAATCTTCTGAACTATCC
AAATGTTTTGAGTAATTGGAACAATGACACTGATTTCTGTAACACTGAGCCAAGTTCATC
TGTTACTGTTATCTGTTATGAGGATAACATAACACAGCTTCATATAATAGGGAGCAAAGG
GGCTCCTCAATTACATAATTTCTCGATCGATTCGTTTGTCACTACACTTGTTGAGCTTCC
AAGTTTGAAAGTTCTAAGATTAGTTTCTCTTGGTTTATATGGACCATTGCCTAGTAAACT
TTCAAGACTTTCATCATTAGAGATACTTGACCTTAGTTCAAATTTCTTTCATAGTAACAT
ACCTCGAGAAATTTCATCGTTAACGAGCCTCCAGAGTTTAATACTAGATGGAAATAAGTT
CACTGGAAGACTTCCAAATGGACTTGGTTCACTTGTTGTTTTGGCAGTTTTGAGTGTAAA
GAACAATTCTTTAGATGGACATTTACCTGATATGCTCGGAAGTTTGCATAATCTTCGTGT
ACTTTCACTTTCGAGGAATAATTTTACTGGTGATGTGCCTGATCTTAGTGGTGTCGAAAA
CCTTCAAGTTCTAGACTTGGAAGATAATTCTCTTGGACCGAAATTTCCACAAGTTAGCAG
CAAAATCCAAAGCATTGTGTTGAGGAACAATAAGTTCACTGCAGGAATTCCGGAGAAAGT
TCAATCTTACCATCAGCTTGAACATATGGACATTTCTTCAAACAGATTTATGGGGCCATT
TCCTCCGTCTTTGCTGTCCTTGCCATCGATCACTTATCTTAACGTTGCAGGAAATAAGTT
AACGGGAATGCTTTTTGATGATAATCAATGCAATGCCGGATTAGATTTTGTGGATCTATC
GACTAACCTGTTGAGTGGAAGATTGCCTAGTTGCCTTCTGACTGGTCCTAAGGACAGGAT
CGTGCGTTACTCTAACAATTGTTTAGCAACTGGAGGCGGAACTCAACATCCATTTTCCTT
CTGTCGGAATGAGGCGTTGGCTGTTGGTATCTTACCTCATCATCATAAACATATACCAGG
TTCAAAAGTGGTTCTTGCTTTGATCATTTGTGGTAGCATCATTGGTGGAGTCGTGCTAGT
TTGCGCGACTATTATAGTAGTAAGAAAATTTCTTGCAAAGATAGCTACACCGAGAAAAAC
AACAAGATCAATAGTAGAAAATGCAGCATCTACATATACATCAAAGTTATTCACTGATGC
AAGTAAGATTCCTCTCTTCTTTCCGTCTTAGCTTTGAAGTTTGAAGCATAGTACAATAAT
TTTGGCTTACCTGTGCACGAAATACACAATAGGAAGGCGAAAAAAGCCTAAACATACGAA
GTTTCCTTCTATTCCTAATTACTACTAATTTTCCATCTTGTGTGTTTCTTCTCCGTTTAC
AAGACTATGTTACTCGAACAATGAAGCTGGGATCACTTAGTCTTCCATCTTATCGGACCT
TTTCATCCGAAGAGCTTAAGGTGGCAACAAACAACTTTGATGCAGCAACTTTTATAGGCA
ACAGTTCTGATGATCAGGTGCATTTCAAGAATCACTATGTACCTTACTTTTCTTTCTTAA
CGTCATAATTGAGATCCTTAAACGTTCGTTTAAGAACATTTTATGGTATTATCATCCTTC
ATTGTTTTGACACCACAAATGAGTCAGAACCTTGCAGCCTATCAAACATAGTCAGTTGCC
TTAGAATTCTTAATCTATACCTTATCCCATTGAAGGTGTTTTAGAAGATCTTCTATCATG
TTACTAGTCGTTCATTTTCTTAGACGAGTGGATATCAAACAGGTATGGTATGATAATACT
TCTTCGTCGAGATCCATCTAGAGTTCATTAGTCCATAGAAAACAAATGTTGATACATACA
CTTATGTGATACTCACGTCTGAGCGAATGTAACAACTAAAAGAGTAAACTGCATATATTA
TATGACAGAATTAGTGAGTATGGAGGTTAACTTACTGTTTTTTTTGGATTCAGCTGTACA
GAGGTCAGCTGAAAGATGGTTCATACATAACCATAAGATGCCTGCAAACGAAACGAAAAA
ATAGCAGTCAAAATTTTATGTATCATATAGAATTGATGTCAAAACTCAGACATAATCATC
TGGTCAGTACTCTTGGACACTGCTTCAAGTGTTACTTGGATGATTCGATTGTTAGCAGGA
TATTTCTGGTCTTTGAGTATGTATCAAATGGTACCCTAAGAAGCTGGATCTCTGGTAATT
ATTCAACAAGCATTTATACTTATCGATCCCAAGATTGCAGTACAACAGTAATGTGTTATC
CGATTCTGCAGATAAACATGCTAGAGGAAGACTAACGTGGACACAACGTATAGCTGCTGC
AATCGGAGTAGCAAGGGGAATGCAGTTTTTGCATACTGGAAATGTACCTGGTGTGTTTTC
AAATAACATAAAGATAACAGATATCTTGTTGGATCAGAACTTTGTAGCCAAAATTTGCAG
CTATAATTTGCCTATTCTGGATGAGTATGTAAAGGAGCAGAAGAGTACAAGGTATGCCTA
ACTGTTCCGAATTCTAAGTTGCTCGGACTCTCCAAAAATATTGCCACACATGTCGGATCC
TTCAAAAATGCACTTCTTTTAAGGATCCAACATGCTCCCAATGACATGATTGTTAATATA
TTAGTTAATCATGTGTACTATGAAGATCAAATATTATGCTAATCTCTCTATGGTAGTAGA
CATAATTAACTAATATATTAGGTACAAAAAAAGTTGTATTAGTTTCTTACTTCTACTAAT
CCACAGGGCTAATTATGAAGAAAAATTTGTTGTATATGATTTTGGAGTAATATTATTGGA
GATAATTAGTGGGAAGCAGATAAATACCAAGAATGAAGTGAGAGTTATACAAAATCAG
