Microarray Probes on PGSC0003DMT400072463
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2256_PI426222305 |
JHI_St_60k_v1 |
ACACAGATATTTGGGGAGGTGATGAGGATCAAAGATGTCATTGATAACAACCAAGCTGAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072463
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072463 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g080930.1 |
+2 |
5e-166 |
495 |
263/279 (94%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:61435700-61439911 transcript_region:SL2.50ch10:61435700..61439911- go_terms:GO:0005634 functional_description:Transcription elongation factor A protein 2 (AHRD V1 *--- TCEA2_HUMAN); contains Interpro domain(s) IPR010990 Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal |
| TAIR PP10 |
AT5G05140.1 |
+2 |
2e-81 |
222 |
139/286 (49%) |
Transcription elongation factor (TFIIS) family protein | chr5:1520353-1522297 FORWARD LENGTH=436 |
Transcript Sequence (2641 bp)
>PGSC0003DMT400072463 2641 pgsc_dm_v3.4
GAGAAATATAATTAAAATAATCAAAGAGAAATAAAAGATAGCTATAGAGAGAGAATATCT
TCCATACTTTTTTAACATATATTCTTTTTCTCTGGAAAAATTTCTTTCAATCGGAATAAT
TTTCTCTAGATTTCTCTTCTTATATCTCACCAAAATCTTCATCGGATTTTTTTTTAATTT
TTTTTTTATCATTTTGGGTTTATAGAGTTAATTTTCCTTAAAAAACATAAAAATCTGTAT
CCGATTGCATTTTGCAGAACTGAATCTCCGGTGATACTGATTATTCAGTTTCCGATCATC
GGAAAAAGTGCCTAATCGGAAACCAGAGGATTTTATTGCTAAAAACCTTGTTTCCGATTA
GAATTTGTATGAACAATCGATTTTTTTTTTTTGTGGGTATAATTAAAATCGGGTAAAGAT
TGAATTTGGTTATCTGGGTATTGATAAATAATTGATTTTACGATCTGGGTTGATTTTTTT
TTGCTCTGAATCATCAGTTATGGCGAAGAGTAGTGGGACTTTGGATAAATGGAGGGACTA
TTTTCGTACTGCAAATTCGGATATATTCGATATAATTGAGTATGCAGTTATGGTTGCTGC
TGTTGATTGTCCAAAGGAGTTTAAACTGAGAAGGGATAGAATTGCTGAAATGCTGTTTAC
ATGTAAAGTTACTATGTGTTTTGGTTGTGAGAAAGTTGATTTAGCTGTACCAATTGCTAG
TAATGATGATGAAGGAAAAATTAAGAGTAAGGATGAGTTTGGTGTTAGTAAAGAGAGCAA
AGCTAACAGTAGGATAGATCATCATGATGTTGAGATGAATGTGAATCAAGTTAGCAATTA
TAGTTATGGAGAAGCTGAGGCATTAACTGAGGAGATGGAGGAAGAGACACAGATATTTGG
GGAGGTGATGAGGATCAAAGATGTCATTGATAACAACCAAGCTGAGTCTGCAGAGTTGTT
TGAGTGCTTAAGAAGGCTTCAACTAATGGCTTTGTCTGTGGAGACTTTAAAGGCCACAGA
GATTGGAAAGTCGGTTAATTCTCTCAGAAAGCACAACTCAAAGGATGTTCGACATCTAGC
CCGGACATTGATTGAGGATTGGAAGGTCTTGGTAGAGGAATGGGTGAATGCTACTGCAGC
CTTTGCAGGTAACGAAAGCACTCCAGAGTCTATGAAAGCATCTGTAGTTGATCAAGACGA
GGAAGGACTTCCTTCCCCACCTTTAGATGACTTAGCTTTCTTTTCTGCTCAGACCACTTC
AATTGAGTTGTCACAATTCTTTGATGGCATGGATGATGATGGAAGTGAGTAGAATTTGTG
TCCATATTCTTTCAATATCCCTTCGCTATTCGGCTCTTTGTTTGGATTCCCCTCTAATAA
AGGTATATTGTTCCGATTGGGGATTTTATTTCAGATCCTCGAAACAGTGGGGGATTCAAT
GCGAATCGTGGAAATGGCCGAAAGCCATCACTAGGTAACCAGAACATTCCTTTCCAGAAG
AAGCAGTCTGCTGATTGCTTCAATGCTTCTCCCAAAGAGAATAAGGGTGAACAACAAAAG
AAACAGGAAGCTGTAATCAAGAAACAAACAACAGTCGTGAAACCAACTAAGCCATCTGGA
GGTGAATCTGGGCCTGGAAGACCGATAAAACCAGCCTTGGAGCAGAAGCTCAAGGTTAAC
GAGATGAACTTCCAGCAGAAATCTGATAAAGGCACAATTCAAAAGAGGCCTGTGGCGCCT
CAACAGAATAAACTTAGACATTCAGATGAGGATGCTGTTCAAGTCAAACTCGAGGCTACA
AAAAGAAAGCTCCAGGAACGGTACCAAGAAGTTGAAAACGCCAAGAGGCAGCGAACCATA
CAGGTTATGGAGTTGCATGATATCCCAAAGAAGGGCCCAAACCAAGGTGTTGGCCTTAAG
AATGCTCATATGAGACCTGGCAACAATAATAGGCATTGGGCAAATGGACGTCGTTGAATT
GATTTCAACAGACTGTCTCAATAAGTTCTCTAGTTTCATCCACCTCTGCAATTCATTCTC
TTAGAACAACACCGATGACTCCTCAGCTGAGTAAATTCTCAACTTGCTGTGTAAACAAAG
GATCTCGTCTAATTGACCTCAACAGAGAGAGGCCACTCTCAAATCGGGAGGGGCATGTTA
ATGTTATCGGAGTTACATTATGATGCTTAGATAAACATTTTGTTAGACCTCACAGTACAG
GGGCTTGCGGATTTCGGTTTAATTTTCTTTTTGATCTTTAGGAAGGACATAATATCGTCC
ATTTCGGATGAACCATCTTTTGAGCATTAACCATATGCTTTCATAGAAATACCCTGACTG
TAAAAATTTGCACAGAATAAGTGCATTGAAATATATGAATTAGAATATAAAGTGATGGTT
ACATTTTGGCCGTTTTTAGACAATTAGATAGAGCTATTTGAGATGATTTTGTTCTATGTA
GCAATAAGTATACTTCTTGATGGGGTTTTGCTCCACCCTTAACCAGATGTCTCATGTTCC
AGCCTCGGGGATGGAGAAAATCCTATTGGGTGCGACTTATGCCATACTTGTTTGTTGACT
TTGTTGGTTTTGGATAAGGATTTGTGTAAAGGTATTCCTCCCCCCTACCCCCTACCCCCC
A
