Microarray Probes on PGSC0003DMT400072452
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2033_PI426222305 |
JHI_St_60k_v1 |
CGCGCTGCGGAATTACAAAAGATTTTGGAACTCAAGATTGGATGAAATATCATATTACTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072452
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072452 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084030.1 |
+3 |
2e-54 |
171 |
82/88 (93%) |
evidence_code:10F0H0E0IEG genomic_reference:SL2.50ch10 gene_region:63026577-63027672 transcript_region:SL2.50ch10:63026577..63027672+ functional_description:Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein |
| TAIR PP10 |
AT2G28085.1 |
+3 |
6e-19 |
79 |
39/71 (55%) |
SAUR-like auxin-responsive protein family | chr2:11968182-11968556 REVERSE LENGTH=124 |
Transcript Sequence (483 bp)
>PGSC0003DMT400072452 483 pgsc_dm_v3.4
AAAAAATATATCACCACATCCCAAAATTAGAATATTCAACAATTCTATATATGGGAAAAG
AAAGGAGCAATTCATGTATAGTCATGCTTAAGATTATAATGAGAAAATTCAAGAATAATG
AAGTGGTACCAAATGATGTTAAAGAAGGACATTTTGCTGTATTTTCAGTAAATCCAGAAG
AAGAGCCAAAGAAGTTTATTGTGGAGTTGCATTGGCTCAATAATCCATTATTCTTGAAAT
TATTAAAACAAGCTGAAGATGAATATGGATTCCAACAAAAGGGTATTCTTGAAGTTCCTT
GTCGCGCTGCGGAATTACAAAAGATTTTGGAACTCAAGATTGGATGAAATATCATATTAC
TTTTTAAACGTTTCTCTTGTTTGTTGAAGTATGTGACTGTCTTATTTAAAAGATGTGACA
GAAAACACATATTTCATTTATTTAATTATATTCTCACAATATGCCCCCTAACCCTAATGT
GTG
