Microarray Probes on PGSC0003DMT400072449
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2087_PI426222305 |
JHI_St_60k_v1 |
ATTTCAATTTTTCGTGTGGAAGACGTGAAGGCGGATGCCAGTAGTGGAAAATTGACGGTG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072449
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072449 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084000.1 |
+2 |
4e-133 |
392 |
243/348 (70%) |
evidence_code:10F0H0E1IEG genomic_reference:SL2.50ch10 gene_region:63001705-63003208 transcript_region:SL2.50ch10:63001705..63003208+ go_terms:GO:0030001 functional_description:Heavy-metal-associated domain-containing protein-like (AHRD V1 *-*- Q6K9R4_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein |
| TAIR PP10 |
AT5G03380.1 |
+2 |
3e-27 |
112 |
114/400 (29%) |
Heavy metal transport/detoxification superfamily protein | chr5:832400-834301 REVERSE LENGTH=392 |
Transcript Sequence (1329 bp)
>PGSC0003DMT400072449 1329 pgsc_dm_v3.4
ATTTATTTCAAATAACCATAAAACACTCTAATACTCTCATAAAATTCAGCCTCGAAGAAT
TCTCTAATTTCTTCAAATGGGTGAGGAAAAGGAAAAAATCAAAGTTGAGAAGAAGAAGAA
TGACGCCGGAAAGAAGTCGGCCGGCGGTGGGAAAAACGACGCCGGCGGCGGTATCGCTAC
TATTCTGTTAAAGTTAGATTTGCATTGTGAAGGTTGTGCTCAAAAAGTTAGACGTTCTGT
TCGTCACTTCGAAGGTGTGGAAGACGTGAAGGCGGATGCCAGTAGTGGAAAATTGACGGT
GGAAGGGAATGTGGATCCCTTATGGCTCCGGGAGAAGGTGGAAAGCAAGACTAAGAAGAA
GGTGGCGCTCCTCTCTGCTCAGCCCAAAAAAGTTGCCGCCGGCACCGGTGACGCCGGAGG
AGAGAAAAAATCCGATGAGAAGGTTGAGAACAAGGCAGTAGAGGAGAAGGTTGAGAACAA
AGTAGCAGAGGAGAAGAAAGGGGAAGATAAAAAGCCCAAAAAGGTTCAATGTAACACAGA
GGTAGTTCAGCAGCATTGTGACGGATCTGCACAAAAAGTAAAGCGATTTCTTATAAAGGA
ATTGAAACATAAATTGAAACGTAATGTAGCTGTTGTTCCACCGAAGAAAGGTGATGGATC
AGGTAACCGGTGTGATAACAAGAAGAACAAAGAAATTGCTCGTGGTCGTGGTAGTGGTGG
TGGTGGTGATGGAAAAAAGAAAGACGGTGCATCATCGTCTACAATGGCAAGTAAAAGCAC
AGAACCAAAAGAGCAAAACACAGAGGTGATGAACAACAAAAAGGAATGTCACCATGGTGA
TTACAGTAATCCAAATATGTACTACACAATGCCACCATCAATTTACAATCAAAATCATGT
GAATCAAGATTATGGCGCAACAATGCAGGATCATCATGGTTATTATGGTCATAGTGTTGG
CTATATGCCACCACCACCATACCTAACTGCATCGCGCGATCATGGTTATGGATATAGAAC
TGGATATGTGTCACCACGACACTTTACTGCACCGCGTGATCACGATCATGATCATGGTTA
TGGTCATATTGGGTATGTACCACCACCATACTCTGCACCTCAATATTTCAGCGATGAAAA
TCCTAATGCTTGCTCCGTCATGTGACATACAATACCTTGTTGAAGGGAAGATCAGTTTAG
CTTAAATGAAAAATACAACACTTATATATAGCGTTCGTATACGAAAAATAGTATGTACGA
TATCATAGTTTTTGTTTAGGAAATTACAAGTTTAGAGAGTTTTTGAGGTTTACTTGATTT
CAATTTTTC
