Microarray Probes on PGSC0003DMT400072433
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2379_PI426222305 |
JHI_St_60k_v1 |
GAAATTCAGAGTACAAAGTGAAACAATGGTCTCAAAGGAATTAGTAACATCGGTACCAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072433
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072433 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g083940.1 |
+1 |
0.0 |
1018 |
547/582 (94%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:62966616-62968361 transcript_region:SL2.50ch10:62966616..62968361+ go_terms:GO:0055085 functional_description:Nodulin family protein (AHRD V1 ***- D7MWD3_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like |
| TAIR PP10 |
AT2G39210.1 |
+1 |
0.0 |
684 |
364/572 (64%) |
Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601 |
Transcript Sequence (1743 bp)
>PGSC0003DMT400072433 1743 pgsc_dm_v3.4
ATGGCAAAGTTAACTGAAAATGGTGGCTACAAAGCTAATATGTTAGGCTTTAGCATCCAT
TTTCTCATGAGCAAATGGTTCATGGTTTTTGCTTCTCTTCTAATCATGTCAATGGCTGGT
GCAACTTACTTATTCAGCCTTTATAGCAATGAAATCAAATCCTCATTAGGCTATGATCAA
ACAACCTTAAACTTACTAAGTTTCTTCAAAGACTTAGGTGGTAATGTTGGAATGATATCC
GGTTTTATCAACGAAGTCACTCCACCATGGGTAGTTCTATTAATGGGAGCAATCATGAAT
TTTTTTGGTTACTTCATGGTATGGCTCGCGATTATAGGACGTATAGCTAAACCTCCCGTT
TGGCAAATGTGTTTTTACATATGTATTGGTGCAAGTTCTCAGACATTTGCTAATACTGGT
GTGTTAGTAACTTGTGTCAAGAATTTCCCCGAAAGCAGGGGAATTGTACTTGGATTGTTA
AAGGGATTTGTTGGTTTAAGTGGCGCGATTATCACACAATTGTATCATGCTTTCTATGGA
AATGATGTGAAGTCTCTTGTTTTGTTAATTGGTTGGCTTCCTTGTGTTGTTTCATGTTTT
TTTCTACGAACTGTTCGTGTTATGAAGGTGGATAAACAGGCTAACGAGCTCCGAATTTTC
TACAAACTTCTGTTTATTTCACTTGGCCTAGCTGGTTTTATCATGGTTGTAATTGTTGTC
CAAAATAAGGTAAGTTTCACTAAGCTTGAATATGCAGGAAGTGCTGTTGTAGTACTGATT
TTGCTCTTTGCTCCGCTAATTCTCGTCTTTAAAGAAGAGTTTACCTTGTGGAAATGTAAG
CAGCAAGTCTTACATGATACTCCACAAGTGAACGTTGTTACAGAAACTCCGTGTTCTGTT
CAGCCAGAACCAGAAGAAATTAGTGACTTAAAGCCAAATATTTGGTTCAGTAATGTGTTC
AAGCCACCACCAAGGGGTGAGGACTACACAATACTGCAAGCGATTTTCAGCTTAGATTTC
TTGATTCTGTTTACAACGACTACTTTTGGGGTAGGCGGTACACTGACAGCCATCGACAAC
TTAGGCCAAATAGGGAAGGCGTTAGGCTATCCTTCAACAAGCATTACAACATTTGTGTCC
TTACTCAGCATATGGAACTACCTCGGGCGAGTTGTATCAGGGTTTGTATCCGAAATCTTT
TTATCAAAATACAAGTTCCCTCGTCCGTTAATGCTCACATTAGTCCTCCTCCTGTCATGT
ACCGGGCACCTTCTCATCGCGTTTGGGGTCCCTAATTCCCTCTACATTGCTTCAATCATA
ACGGGGTTCTGTTTCGGAGCACAATGGCCATTGATATTTGCCATTGTATCGGAGTTATTC
GGGCTTAAATACTACTCAACTTTGTACAATTTGAGTGGTGGAGCTAGCCCTTTTGGTGCA
TATATTCTTAATGTTAGAGTTGCAGGCCAATTGTATGATAAAATGGCACTGAGACAAATG
ACAGCTAAAGGATTTACTAGAGGTGTTGGTGAAGATTTGACATGTATTGGTGTGGAGTGC
TATAAAGTGGCTTTTTTGGTTATCACTGGTGCTACATTAATAAGTTGTGTTGTTTCACTA
GTTCTAGCAATTAGAACAAGGGAATTTTACAAAGGTGATATATATAAGAAATTCAGAGTA
CAAAGTGAAACAATGGTCTCAAAGGAATTAGTAACATCGGTACCAAAAAATATAGATGAG
TAG
