Microarray Probes on PGSC0003DMT400072432
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2381_PI426222305 |
JHI_St_60k_v1 |
TGGTGCTTTTGTTGGTGGTAATATAACACTTTTACGTGGAATTTTGTATTGGATTGCCCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072432
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072432 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g083880.1 |
+1 |
1e-161 |
458 |
243/249 (98%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:62931204-62932616 transcript_region:SL2.50ch10:62931204..62932616+ go_terms:GO:0016020,GO:0016021 functional_description:Aquaporin (AHRD V1 ***- D6BRE1_9ROSI); contains Interpro domain(s) IPR012269 Aquaporin |
| TAIR PP10 |
AT2G36830.1 |
+1 |
2e-138 |
399 |
210/250 (84%) |
gamma tonoplast intrinsic protein | chr2:15445490-15446336 FORWARD LENGTH=251 |
Transcript Sequence (1167 bp)
>PGSC0003DMT400072432 1167 pgsc_dm_v3.4
GTTTTAGACCCTTACAACATCATACAAACACTAAAAAAAAACAAAACTTTTTTATCAAAT
ATTTAACATTCTTGATTTTCCGACGATATGCCGATCAGCCGGATAGCAATCGGAAGGACG
GAGGAAGCCACTCACCCCGACGCCTTAAAGGCGGCGTTGGCTGAGTTTATCTCCACCTTA
ATTTTTGTATTTGCAGGTTCAGGTTCCGGTGTTGCATTCAGTAAGTTGACCGGTGGGGGT
GCAAACACCCCCACCGGTCTCATTGCTGCTGCGATTGCCCATGCTTTTGGGCTATTCGTA
GCGGTTTCGGTTGGGGCTAACATTTCTGGAGGACATGTTAACCCTGCTGTTACATTTGGT
GCTTTTGTTGGTGGTAATATAACACTTTTACGTGGAATTTTGTATTGGATTGCCCAATTG
CTTGGCTCTGTTGTTGCTTGCTTGCTTCTCAAGTTCACCACGGGTGGCATGGAGATAGGT
GCATTTTCTTTGTCTGATGGAGTTGGTGTAGGCAATGCATTGGTACTTGAAATAGTAATG
ACATTTGGGCTAGTCTACACGGTGTACGCTACCGCAGTGGATCCAAAGAAGGGTAGTTTG
GGAACAATTGCACCAATTGCAATTGGTTTCATTGTTGGAGCCAATATCTTAGTTGGTGGG
GCTTTTGATGGGGCCTCAATGAACCCAGCAGTTTCATTTGGGCCAGCAGTTGTGAGTTGG
ACCTGGAACAACCATTGGGTTTATTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGG
CTTATCTATGAGTTCTTTTTCATTAATCAGACCCATGAACCATTGCCCCAATAAGATGAA
AATGTAAAATGATGAATTTTAGAATTATATTGTGTGTGATTTCACAATTGCCCTTTGATT
TGGGATGAACTTGGTTGTATTGTGTGAAGTTGTTTGGGTTGGGAGAGGGGGTTGAGGGTA
ATTATGTAATTGTGTTGGGGGTGGGGGTTGAGGGATTTATGTAATTGTGTTGGGGTGTGG
GTGGGGAGAAGGTTGGGGGTGGGGGTATATATGTAATTGTGTTGGGGGTGAAGGTGGGAT
AGGAGAAGATTGGGGGTTGAGGGTATTTATGTAATTGTGTTTGTTCTATGTTACAATTGT
CTATTGAAGTTTCTTTTACTATGCACT
