Microarray Probes on PGSC0003DMT400072213
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2440_PI426222305 |
JHI_St_60k_v1 |
GGTGTTGTTTCTGTTTGTCCCTTATAAAACTGTGAATTCACTTACAAGTCCATTGTGTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072213
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072213 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g080960.1 |
+2 |
1e-172 |
488 |
248/267 (93%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:61464101-61464901 transcript_region:SL2.50ch10:61464101..61464901+ go_terms:GO:0003700 functional_description:Transcription factor (Fragment) (AHRD V1 **-* D6MKQ8_9ASPA); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class |
| TAIR PP10 |
AT3G10760.1 |
+2 |
1e-93 |
288 |
187/341 (55%) |
Homeodomain-like superfamily protein | chr3:3369814-3370821 FORWARD LENGTH=335 |
Transcript Sequence (1277 bp)
>PGSC0003DMT400072213 1277 pgsc_dm_v3.4
TGGTCTTCAGTTCATTTTTGACAATTAGTCCATCAATCTGAATTCCCAAGAAACACAGAA
ATTGACCCTTCTCAGAAAAATCTAGTCTTTCAAGTTTTTATCACTTCTTTTCTTGGTCCA
TCAATCTGAATTCTCATAAAGGAGACAACTTTCCAAGAAAATTTGCAACCCCATCTCATA
AAAATCTGATCTTTTTCTAGTTTCATCTTCGTTTTCAGCTCAATTGTCAATTGTTCCATC
AATCTTGAAGTACCAAAAATCCAAGATTTTGTTAGGGGAAATGAGGGAAGAAGATTCCAA
TTGGTTTGCTAAATGGGAAGAAGAATTACCTTCTCCAAAGGAACTAATGCCTTTATCCCA
AACCTTAATTACTCCTAATCTAGCTATAGCTTTTGATATTCAAAACCCCAACACCCCAAA
TCCCAAAATATCACCACTAGTTCATACTCTTTCATCAGCCGAGTTCGAGTCGAACTCGGC
TGAGTTGGGTGGCATGGCAGGTTCATCGGGGGTTGGTGATGAACCTGCCCGCACCCAAAA
AAGGCCTAGGCTTGTGTGGACACCACAGCTACATAAAAGGTTTGTGGATGCAGTTGCACA
ATTGGGGATCAAGAATGCTGTTCCCAAGACTATAATGCAGTTGATGAGTGTAGATGGCTT
AACTCGTGAGAATGTTGCTAGTCATTTGCAAAAATATAGGCTTTATTTGAAACGTATGCA
GGGTTTTTGTAATAGTGGCAGTGTTTACGGGGCAGGGGTGGATCCCGCAACAGATCATCT
GTTTGCCAGTTCACCCGTGCCTGCTCATTTTTTGCATCCAGGGAGGGGAAATTCTGATCA
TTACATGCCATTTGTGCCAGTGGCTGCAGTTATTGGACATGCTCCACAACTTCAGCAGCA
GTATAGGCATTTCGGGTCACCGCCCAACGGGCAGTTTGAGGTTCCATTCTTGCCCCGGCA
GTCGCAGCAGTCGGTTCAGAGAATGGGGACATCAGTGCATAGTAGTAGTTCTGTGTTGGA
GTCAGCTACAGCTGCTAATGGGAGGAAGGTTCTTACTTTGTTTCCAAATGGGGATGATTG
ATTGAAATTCCAAGAGTTGATTTCTCAGATGGTCACTTGTAATTTGTAACTTTTAACTTG
TTCTGTCAATTTTGCTTATGGATATTTTTGGAATAATACTTTAGTCTTCGATTTAGAACC
TTTTGTTGGATAGGTGTTGTTTCTGTTTGTCCCTTATAAAACTGTGAATTCACTTACAAG
TCCATTGTGTTTTAAAG
