Microarray Probes on PGSC0003DMT400072204
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2030_PI426222305 |
JHI_St_60k_v1 |
TTCTCGTTCTGATTTACAACCTGATCAATCGTTGTATTCTTCAAACGTAACAGGTGTTGG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072204
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072204 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g080890.1 |
+3 |
1e-88 |
278 |
178/201 (89%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:61391472-61393927 transcript_region:SL2.50ch10:61391472..61393927+ go_terms:GO:0008152,GO:0055114 functional_description:3-oxoacyl-reductase (AHRD V1 **-- B6UEX0_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase |
| TAIR PP10 |
AT1G63380.1 |
+3 |
2e-55 |
190 |
120/201 (60%) |
NAD(P)-binding Rossmann-fold superfamily protein | chr1:23505582-23506504 FORWARD LENGTH=282 |
Transcript Sequence (1595 bp)
>PGSC0003DMT400072204 1595 pgsc_dm_v3.4
AAAATTTAATGGAGAACCATGCTGAAGTAGGACGCCAGCTGGAGCCATGGGGAGAACTCG
CCGGAAAAGTGGTGCTGATCACCGGAGCTTCGTCGGGAATCGGTCGAGAATTTTGCCTCG
ATTTATCAAAAGCTGGTTGTAGAATCATCGCCGCCGCTCGCCGTATCGATCGATTGAAAT
CTCTATGCGACGAGATCAACGGAATCAGCTCGAATTCCTCGATCGAATCGACAATTTCAA
GTCAGGAGCTTCGAGCCGTAGCGATTGAGCTCGACGTTAGCGCGAACGGTGCTGCCATTG
AAGCCGCCGTGCAGAAAGCTTGGAACGCCTTTGGACGTATCGATGTTTTGGTAAATAACG
CTGGAATTCGAGGCAGTGTGCATTCTCCACTGGATTTGTCGGAGGAGGAATGGGAGAAGA
CCTACAAAACGAACTTAAGAGGGGCATGGTTGGTGACCAAATTTGTTTGTAAACATATGC
ATGCTGCTAATCAAGGAGGATCTGTTATCAATATCTCTTCTATCTCTGGTCTTAATCGTG
GACAATTACCAGGTGGTCTTGCTTATGCGTCTTCAAAGGAAGCTCTCAACAGCATTACAA
AGGTAGTGTCTTGTTTTTCTTATACAATATGGTTTGTACATACATTTAAATGCTCTGGAA
ACATACGTATATAGATTCACATATTTGTTGTGCAAAATGGTTTGAGAATACATATAGTAG
TGTAGCACTAACGAAGAGTGAGTAGTACTCTAACATAGTTGCCACACAACGCTCTTGTGA
ACTATGATCGAGCCAGAAATGTGGATCTAGTTATGGTAAATGTGGAGGCATCAATGAGAA
ATCTAAGCAGATAATATTTCTAGTTGTCTTACTACCTTGTTAAACTTTATATATGTGATG
CCTCGCGCATTTCAGTCATTTGGCTGTGATTCTTTTATACTTGTTTATAGCTTATGCTTC
ATAGATATTACTTGTGGCATTGTCCAAGATGTTCTACCTTCGGAATGTACTCTGAACTGT
GTCGTAATGCACCTCTGTATTGTTTTCTTCTCGTTCTGATTTACAACCTGATCAATCGTT
GTATTCTTCAAACGTAACAGGTGTTGGCCCTCGAATTGGGACCATACAAGATCAGAGTGA
ACTCAATATCACCAGGACTTTTCAAGTCTGAGATAACAGAGGGTCTCATACAAAAAGACT
GGCTTCAAAACATTGAACTGAGAACTATTCCATTGAGAACACATGGAACATCAAATCCGG
CTTTAACTTCAGTAGTACGTTATCTGATCCACGATTCCTCAGAATATGTTTCAGGTAACA
TGTTCATAGTAGATGCAGGAGCTACTTTACCCGGTGTTCCGATTTTCTCATCCCTCTAGT
TATAGAGGAAAACAAATTAGGAAAAAAAAGGATGGAGAATGGAAATGTTAGGGAAAGAAC
AGAGGCTTGACTTTGGTTGCCTAAAGATAATTTTATGTTTTTGTTTGACATATTTATGGT
AAAGAATGTTTTTTTTTTTGTGCATGGAATTGTTTTTTTATTTGTATAGCTCCACCATTA
ATTGAAATTAATTGAACTCCTATGAAGTAAAGTTT
