Microarray Probes on PGSC0003DMT400069452
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_16504_PI426222305 |
JHI_St_60k_v1 |
GCACTGTACATAGAATATCCATTTTTTGTGTGATGATTGCTGAGTTGATACTAGGTGTTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400069452
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400069452 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G48020.1 |
+3 |
9e-22 |
90 |
48/106 (45%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17724593-17725000 FORWARD LENGTH=135 |
Transcript Sequence (1008 bp)
>PGSC0003DMT400069452 1008 pgsc_dm_v3.4
GGCCCTTTAAAAACTTCCATTACATCATTTCCCACCAAATATACTCATCACCCAAACTTC
TATTATTAAGCTCTACCAGTTTTTCCTTTCTCCGTCTTCTCTAATCACCAGCGAATGCAT
TAACCGATATTTCAATGGCCGGTTCTGAATTTCCTCACGCATATGCAGAAACGCCAAGCA
TCGATAATTCCGATAAGCTATTTCAAAGACGTCGTCGTTGTTTCTGCTTCCCATCTTTCC
GTTCTCCAAATCAATTAACAAAATATGTTAAGTTGGACTGGTGGCATAGGTTACGTAGCG
GTGCGGTTACGGAGGGATCTGTATGGGCGAAAGGAATCAACGCTTTGAAGAAGCTTCGAG
AATGGTCGGAGATCGTTGCCGGACCGAGATGGAAGACTTTCATCCGGCGGTTCCATCGGA
ACAAAAGCGTTAATAGGAATGCGAAATTCCAATATGATCCTTTGAGTTACTCACTGAACT
TCGATGAAGGACGGGGGAATAACGGAGAGGAGGAGGAGGAATTGGTACTTCGGAATTTCT
CGACGAGATACGCATCGATTCCGGCGTCTAGTAACTTCGGCAAAGATGGGCCCAGTTTCG
TTTGAGTGCCAGAGTCGCAAACAGAACTACTATTTGATAGTGATTGGATATCTAACCTTT
ACGAGATAAAGATGAAATATTTCAGGATTAAATTTGATTAAAATTTATATTGTCAATCAA
TAAATTAGTCTCAGCATATAATTTCGAGACAATTTAATCCGCGAGGGACCCCTTACAGTT
CAGTAGTGGGGCTAAGAAAGAACAGCTCATCATAAAAGATAAGTAGGTGCGTGCAAGTTT
TCTACTTTTTGTTGGTACAAAAAAAAAATATTGTGGTTGGTGTTTGTTGTCTAATGTCTT
TTTCCTTGTTTAATTTAATTTTCTTCTGTTTGTTTTTGTCTTTATAAGCACTGTACATAG
AATATCCATTTTTTGTGTGATGATTGCTGAGTTGATACTAGGTGTTAT
