Microarray Probes on PGSC0003DMT400065825
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_44043_PI426222305 |
JHI_St_60k_v1 |
GCACAACAACTTCATTGCTATCTTATGGGTTTAGGTTTTCCCCTAATTGTTTTGGTTAGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400065825
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400065825 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G20600.1 |
+2 |
1e-32 |
122 |
76/181 (42%) |
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:7194877-7195536 FORWARD LENGTH=219 |
Transcript Sequence (1010 bp)
>PGSC0003DMT400065825 1010 pgsc_dm_v3.4
TTGCCATTGACCTCAAAGACTTGAAGGTTTCCAATTGGGTGCTCACTTACCAGAAACTAC
AGAGGTGCTCACATACTCATTGACAAGCACTTGCCAAAAAGCAAAACACTGTAATTTTCC
CAGATCTTTCTTTGAAGCTCCAAAATCTTGCTCTTCTCAGCAATAAAATTAGTGGTCTAA
AATCAAATACTAATATACTCGCGTCTCATCTGTTCTTCCCATTTTTCCGATTGTTGAACA
TCAATTTTTAACCCTAAACATGTCTGACCATGGATCTTCACATACATGCTGTTTTCGTTG
CACCAAATTCATATTAACTGCAGGCTTAACAGCTCTCTTTATCTGGCTAAGTCTAAGAAC
CTCAAAACCATCCTGCTCCTTACATAATTTTTATTTACCTGCCCTTAACCTATCTGATAA
TTCCAACACCACAAGATCCAATCATACTCTATATTTTCAGCTCAATTTGAACAACAAGAT
GAAGGACAAAGGTGTTCGTTACGACAAAATTATATTAAGCTTCTACTATGGTACAAATAC
AAGTATCCCTTTAGGTAATAGCACAATAAATGGATTTTACCAAGGGCATGATAAGAAAGC
AAAGAAAAAAGGGAAACTGGAAATTCAGAAAATGGCTTGGGATGCTGCTTTAAAGAATGT
TACAAATACATCAAAAGTGGTTTTTAGGGTGGATGTGGCTACTAGAGTAAGTTACAAGAT
TATTTTTTGGTTTGGCAAGAAACATAATTTTACTGTGGAAAATAAAACATTGGAAGTGGA
TAGTACAGGTAAATCAAGTGCACAACAACTTCATTGCTATCTTATGGGTTTAGGTTTTCC
CCTAATTGTTTTGGTTAGCTTGATTCTTTTGTTGTAAATGACTGGTATGATTCAATTCAA
TATTTTGTTCGTTTTGGTTTGATTGTATCCTAGTTCTGTAGTTTGGATCAAATTTTATTG
TTGGATGAACTACATTGCTGATATTGATCCAAAAAAAAATTATGTTTAGC
