Microarray Probes on PGSC0003DMT400065418
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_50040_PI426222305 |
JHI_St_60k_v1 |
CTTGTACGCGGGAAATGATAATGTAAATGACTATGGAACTGTTCAAGAGTACTCATTTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400065418
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400065418 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G11760.1 |
+3 |
0.0 |
624 |
375/737 (51%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3718529-3721123 FORWARD LENGTH=702 |
Transcript Sequence (2904 bp)
>PGSC0003DMT400065418 2904 pgsc_dm_v3.4
TACAATTTCTCTCCTTTATATCTCTCTCTGCCATTTGTTTACAAACTAACCTCTATAATT
CCTCTTAATACAACACCTAATCACTTCTAAATCTCATTTTATCTACTCTTAATCTCACAA
TTATCCAAGAAAGATCACTTTTTTAACCTATAGAGTCATAAAAGAGTGATCTTTATTGTA
TTTTCTTGATTTGGGTTTTTACTTTATAGCAATCTTGGATCACTTTTTAGTTTTGAAAGG
ACAAAAAGTGATCTTTTTGGGTATTTTCTTGTTCTTGGGTCTAGTATTTTGGGGATTTGA
AGTGAAAAAAAATGGTTGTTAAGTTGATGAAGTGGATGCCATGGCCTCCACTTTTATTAT
CTAAGAAATTTGAGGCCAAGATTACTGTAAATTGCCTTAAAGGTTTCAGCTTTTTGTCAG
AAAAGCATGTGGGGGTCCAAGATTTTGATAGATTGAGAGTTGGAATTAAGTGGAAGGGAT
CAACTAAGGGGATTTCTTTGAATTTGAGCTCTTTTACTAGGAAAAGTGTAAAGAAGAATT
TTACAAAAGAAGAGTGTTTAAAGGAAGATGAGGGGATTGTTGAATGGAATGAGGAATTTT
TAAGTGTTTGTAACTTTTCAGGTTATAAAGATGGTGTGTTTCATCCTTGGGAAGTTGTGT
TTACTGTGTTCAATGGTACAAGCAAAGGACCAGATCAGAAGGTACCCGTACTTGCTGCTG
CGACATTGAACCTTGCAGACTTTGCTTCATTAGCTGGAGAAAAAGAAGACGGCATTGAAA
TTTTCGTTCCTTTGGAAGCCTCTATTGGCAAATTCAAGAGTTGCCTTTCACTCTGTCTAT
CGCTCAACCTTGTGGAATTGAGGAACACTAACGAAGCTTCAGAGAACATTCCAAAGTTTA
TCATGTCTGCTCCAGTATCTCCAAATACTGGAAAGGTTTTGTTGATAGACAGAAATGAGG
GTTCTTCTTTAAAAGCAGGTCTGCAGAAAGTTAAATTTTTCAAGGCATTATCTATTAGGC
GACACAAGAAAGGATATCATGAAGAGGAAGGCAGCAGTGATGGAAGGAACTCAGTCAGAA
GTGAGGATCCCAATTATGTTTACCCAGTGGATACAGATTCACTTGATGATGATTCAGAAG
ATGGAGAATCGGAGGAAGGAATGGAGGATACAAGTGTTCAGAAGTCATTCAGTTATGAAA
CACTTGTCTATGCAAACCATGCTGGTGGATCATTTTGTTCAAACACAAGCAGCAGCGACG
ACGACGAGGATTTAGTCCACTACAGCCATCATATTTCAGACACAAGGCACAAGTACCCCG
AGGATACAACTGCAGCACTACGAAATCAATCTGCAGAGCAGAGTTCTAAACGCAGCATTC
TCCCCTGGAGAAAGAGGAAGTTGAGTTTCAGATCTCCTAAAACCAAGGGGGAGCCGTTGT
TGAAGAAACATTATGGAGAGGATGGTGGAGATGATATAGACTTTGATCGTCGACAGCTTT
GCTCATCTGATGAATCTTCTTCAGGGTGGTACAAATCTGAGGAAGCTTCTCCAAATCGAT
TTTCTATCTCCGAGTTTGGAGATGACAGTTTTGCTGTAGGTAGTTGGGAGCAGAAAGAGA
TAATAAGCCGTGATGGACAAATGAAGGTGCAGACTCAGATATTCTTTGCTTCGATTGATC
AACGAAGTGAACGAGCTGCTGGTGAAAGCGCTTGTACAGCCTTGGTTGCTGTCATAGCTG
ATTGGTTCCACTGCAATCCCGAGGATATGCCCATCAAGTCCCAACTTGATTGTCTTATCC
GGGAAGGCTCACTGCAGTGGAGGGATCTTTGTGAAAAAGAGACCTACATGGAACGTTTCC
CAGATAAGCATTTTGACCTCGAGACAGTCCTGGAGGCGAAAGTGCGTCCACTCTCAGTCG
TCTCCGAAAAATCATTCATTGGGTTCTTTCATCCTGAAGGAATCGAAGAAGAGGAGGGAT
TTGACTTCCTTGATGGTGCCATGTCTTTTGACAACATATGGGACGAGATATGTAAATCCG
CTCAAGAAACTCCCGGTCATTGCGACTCCTTTGTTTACATTGTGAGTTGGAATGATCACT
TCTTTATCCTCAAGGTTGAAAAAGATGCATACTATATCATCGACACACTGGGCGAGAGGC
TTTTTGAGGGTTGTAACCAGGCATATATCCTCAAGTTCGACAAAGACACAACAATTATGC
GGGTACCTAGTGAGTCTCAACAATCAGATGATAAACCATCTAGCGATAGAAAAGAGAAAT
CCGATGTCAAAGAAGCTGCTGATGAAGGCAAAATTGTCGTTTGTACCAATGGCTCCGACA
AAATGCAGGAAGACATGGTACCTGAAATCATTTACAGTGGTAAAGAGGCATGTAAAGAGT
ACATTAAGAGTTTTTTGGCAGCAATCCCTATTAGGGAGTTACAAGTTGATGTAAAGAAAG
GATTGATGGCATCGACACCCCTTCATCAACGGCTACAAATTGAATTCCATTACACAAAAA
CGAGCTTTGACCCGAAGTTTGAGTCATCATCTACACAAGGACTGACCGCTAACAGTTTGG
CCATACTACCGTCAGCATCAGAGTAAGCAACGATTGATAAAGCTTTATTAGTATATGCAT
AATGCTAATCATTTTTGTTCTACATATCATTTTAGGAATTTTGAATAGCTAATTGCTGTT
TAGTGCCCCCTGGAGAGTCTCTTCTTTTCTGTTTTTTCTTTCGTATATGAGTGTAACTAG
CTCGGTATCTTCTTCGTCTTTTATTTCTTGTACGCGGGAAATGATAATGTAAATGACTAT
GGAACTGTTCAAGAGTACTCATTTTTTTGTTCTCTCAAAGAGGGAAGTTGAGTTAAATGA
ATATATTAGTTCCATATTGCTCTT
