Microarray Probes on PGSC0003DMT400060842
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_22955_PI426222305 |
JHI_St_60k_v1 |
TAGGCCTGACAGTGGTTACTTGAAGATGAAATGGAAACCCAATGCATGTAGTCTTCCTAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400060842
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400060842 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G06700.1 |
+3 |
2e-132 |
406 |
190/316 (60%) |
Plant protein of unknown function (DUF828) | chr5:2063638-2065810 FORWARD LENGTH=608 |
Transcript Sequence (1967 bp)
>PGSC0003DMT400060842 1967 pgsc_dm_v3.4
CAAAATCTCAAAATTTTCTCTCTCACTTTTTTCCTTTTTTGATTTTACATAAAAAAAGAA
GTTTGTTTTGTTACTTGATAGAGTTTTAGAGCAGAACAACAATGGCAGAAACAGCAAAAT
ATGCAGCTATTAATGGTGGAACTCTGTTTACAGATATGAAAACTCAGTTGTCTCTTCCCA
AAACTAAAAGAACTGTGGCTTGTGCATATGGGTTTGTGTTTATTTTCATTGTTGTTACTA
CTTTCTTGGCTTTTAGTCCTTCACCAAACTCTTCTTCACCGTGGTTTACTAACATTTTTT
CTTTAAGTAAAGAAGATGTTGGTACTTCTTATAGATCTCAGTTTTCTTCTGTTTTCTCTA
ATCTTTTTCCAAGAAGTTCAAAAAACAATTTTGAGCAACCCCATTTGGATAAAAAGGGAC
TAATTGTTGAAAAGAGTGAAAATTATACTCAGAATGATGATAAAGGTGGAGTCTTGGAAA
ACCCCTTTAATTCTTCTTCTGTGTTGAGTGATAAAGAATCATCAGTTGTGAAGAATGAGA
CTTTAAGTGAAGTTTTTGATGATAAAGTTGGAATCTTGATGGGAAATCAGACTTTTGATG
ATAAAGTTGGAATCTTGATGGGAAATCAGACTTTTGATGATAAAGTTGGAATCTTGATGG
GAAATCAGACTTTTGATGATAAAGTTGGAATCTTGATGGCAAATCAGAGCTCAATTGAGA
GTTATAAGTCTGCTGCTGCTGTGAATCAGACTGAAAGTAGAGATTTTGATGATAAAGTTG
GAATCTTTAAGGCAAATCAGAGCTCAATTGAGAGTTATAAGTCTGCTGCTGCTGTGAATC
AGACTGAAAGTAGAGATTTTGATGATAAAGTTGGAATCTTTAAGGCAAATCAGAGCTCAA
TTGAGAGTTATAAGTCTGCTGCTGCTGTGAATCAGACTGAAAGTAGAGATTTTGATGATA
AAGTTGGAATCTTTAAGGCAAATCAGAGCTCAATTGAGAGTTATAAGTCTGCTGCTGCTG
TGAATCAGACTGAAAGTAGAGATTTTGATGATAAAGTTGGAATCTTTAAGGCAAATCAGA
GCACAATTGAGAAAAAATCAGCACCAAAGTTGTCTTCTAAGGGAAAAAGTGCAAATGTGG
AAAAGAAAAGAGATGTTGATTTGGTTAAGTCTTTGTTGAATTGTGATTTCTTTGATGGGA
ATTGGGTGAAAGATGAATCTTACCCTTTGTATAAACCTGGTTCTTGTTCACTTATTGATG
AGCAATTCAATTGTTTTCTCAATGATAGGCCTGACAGTGGTTACTTGAAGATGAAATGGA
AACCCAATGCATGTAGTCTTCCTAGATTGAATGCTACTCATATGCTGGAATTGTTAAGAG
GAAAGCGTCTAGTTTTCGTTGGCGATTCTTTGAATAGGAATATGTGGGAATCCCTTATTT
GTATACTTAAAAACTCTGTAAAAAATCAGAAAAAGGTTTATGAAGAATCTGGAAGACACC
ATTTCAGGACAGAAGCTTTCTATTCGTTTATATTCAAAGAGTATAAATGCAGAGTGGAGT
TCTTTGTGTCTCCATTCTTGGTTCAACAATGGGAAGTTGCAGATAAAAAAGGAGGTAAGA
AAGAAACGCTTCGACTTGATTTGATCGGAGAGTCTGCTGATAAGTATAAAAACGCGGATA
TCTTAGTCTTCAACACCGGTCACTGGTGGACTCACGAAAAGACTTCGTTAGGGAAGGACT
ATTATCAAGAAGGAAATCATGTCCACAACGAACTAAACGTTCTTGAGGCCTTTCGGAGAG
CATTAACAACATGGGGTAGATGGATCGATGCTCATATCAATCCCAAGAAGACGTTCGTTC
TCTTCAGAGGTTATTCTGCTTCTCATTTCAGGTAATAACGCGACATTCAAAACCAAATCA
CATTAACTTGTCGAATAGCTCTAGCTCTTTACCTTGTAGTTTAAGAC
