Microarray Probes on PGSC0003DMT400055510
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_28563_PI426222305 |
JHI_St_60k_v1 |
GGATTACAGGAAATTTTCGATCTTGTGTTGACGGTTGCTAAAGAGAGGATATCATTTTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055510
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400055510 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G36990.1 |
+2 |
7e-104 |
340 |
175/293 (60%) |
RNApolymerase sigma-subunit F | chr2:15537502-15540016 REVERSE LENGTH=547 |
Transcript Sequence (3203 bp)
>PGSC0003DMT400055510 3203 pgsc_dm_v3.4
CAAACATTTGCAAAAGCCATCACTTCCATTCATCTTCAATCTTCAATCTTCAAATGAAGC
TTTTTTAATTCAAGAAAATACTCATGCTAGCACTAAAACCCCTCTTAATTCTGAAAAAAG
ATATCTTTTTTACACCCCAATTACCAGAAAAATAGTTATATATAGTGAAGAATTTCACAA
GATAGCTTAGCTTAAGCTATGGAGGCTGCTGGAAGAAACCTTCTTTCTTCACCACCAACT
TTTTCTCAGAAAACCCAACTCAGAAATTGTTCTTCTTCAGTTCTGATGCTTCATGAGCAT
GCTGCTCCTGTGCTTTCTTCAGTGCCACATGCTTATTTGGGTCGACATGTTCCTGCATCA
GCTATCGGTCCGGAGCAGCAGTTTGAGAATCGGCTGCAATTGCACCTAGTAAAGGAAGAG
AAAACATCCCTGGCAACAATAGATAGGAGGCTTGTGGATGCTGCATCCTCAGAATTGGAA
GAGAATGATGCTGTTGATTCAGAGCAAAATATAAATGCTTTGCAAGTGCAGCTACTTCGT
TGCCCTGGTCCATCATATTCGTAAGATGAAGTGATTACATCTGTTGATTTTAGTATCGTG
TAAATAGCATTCTTTCTAGTGCAGTCATTTCATTAGTTCACTTTGTGGTTTTGCTGGTAG
ATTTCCCCCGTATTATCTGAAGGGAAAAGGACCATTATCTCCGAATAAGGAACCTCTTCA
CAGTAAGGGAGATAAATTAATGAACTTTGAACCACACAGCGTGGTTGCTCTCGCCAGAAA
GGCTTTGTTGGCATCAAGAGAGGCAGCTTTATTAGCTGAAGACTCCAAATTACTTGATGA
TTCTAATTTTCCGAATTTCCTATCCACAAATTTGGTTGATGATAAACTGAAAGAGCAACG
GACAGTAAGGTCAACACGTTTTACAGAGAGGCAGTCTAGAAAAAGGGGAGCTCCAAAGCC
AACACAACAAGTTCAGGAGACAAATCGTTCAGGCAGGCCAGATGTGCGGAGAAAAGTGAA
CGAATCTATTGATCTAAATGATCCTCTTCGAATGTTCCTATGGGGTCCCGAAACTAAACA
ACTTTTAACCGCCAAAGAGGAGTCTGAATTGATTGTCAAGATACAGATATCCATGAAATT
ACAAGAAGTGAAGCATCAGCTTCAGATTCAGTTTGCTCATGAACCAACGTCTGTTGAGTG
GGCTGAAGCTGCAGGGATTACTTCTCGAGAATTGAAATCACAACTTCTTTCCGGCAAGAG
CAGCCGTGAGAAATTAATTAATGCCAATTTGCGAATGGTGGTTCATATTGCTAAGCAATA
TCAAGGACGTGGTCTCAACCTTCAGGATCTATTGCAGGAGGGAAGCATGGGACTTATGAA
AAGTGTCGAGAAGTTCAAGCCTCAAGCTGGTTGTCGATTTCCTACCTATGCATACTGGTG
GATAAGGCAATCAGTTAGGAAGGCCATATTTCAACACTCTAGGACAATCCGTTTGCCCGA
AAATGTGTATGCGCTTCTGTCTAAAGTAAAAGACGCCAAAAAAGAATGCATTCAACAAGG
CAATCGCTATCCAACCAAAGAAGACATTGCATCATGTGCTGGAATGAGTGTGGAAAGGTT
GCAGAATCTGCTTTCAAATGTTAGAACACCTCTTTCAATGCAACAGTCAGTGTGGTCGGA
TCAAGATACTACTTTCCAGGTGATGATTCATTGCGCCACTTCATGCTTTCTTACTAAGTA
CGCAGTGATTTCTTTTCATTTGTCCAAGCCTTGGCTCCCCTCCCGATATTCCCTCTTTTC
AGAGTCAGAAGGATATTACCCTATAATGTTTTTGTGGCTTGCATGTGATACTGATTACTG
GCTAGTCCAAGGGGCTATAAAATCTGGTAGAAAATAGGTCTGTTGCAGAGGACTTAATAA
TTAGCAAGTGTTTTCCATGTTTACGACTTTTCTTTGCTTTCTGCAACCCTTTTTTAGAAA
CTCTTCCCTAGAACTTCTTGGCGCTTTAGACTATGTGCTATTGAATGTTCTCTTGCTTTC
CTGCGAGGTAGGATAGGTGGGGTTATCGGGTACCTACTCTCTTACCAGTAGTATTAGCAC
TTTTCTCGTTGTTTCTTGTTCGTTGATTGTTGTTATCATCTGTGTTTTGTATGCTTCGGT
TATTGCACTAGTTCGTTGTTGTTATTGTTCTTTCTCTGTAGCGCTATATCTCGTTGCTGT
TACTGCATTTCATTTCTGCATTCTTTTTACAAATCACTTTGAGATGCTTTAGCCTTTACT
TGAGTAGAGGATCTATCGGAAACAACCTCTCTATCTCTAGGAGGTAGGGGTAAGGTCTGC
GTACACTCTACCTTTTCCAAACCCCACTCGGATACCCCGCTTGTCGGATTACAGGAAATT
TTCGATCTTGTGTTGACGGTTGCTAAAGAGAGGATATCATTTTTTTCAATCCAGGAAATT
ACTGCTGACAATGCAATTGAAGCACCAGAACTGAGTGTGTCAAAACAACTTATGAGGCGT
CACATACGCGGCCTCCTAAATGTCCTGAGTCCAAAGGAGAGGAAAATAATCCGACTTAGA
TTTGGCATTGGAGATGGCAAACCAAAGTCTCTATCCGAAATAGGCACTGTTTTTGGACTG
TCAAAGGAACGAGTTCGACAACTAGAGACCCGAGCACTATACAAGCTAAAGCAGAATCTT
AACAAGCATGGCCTCGATGCATATTCCGATTTACTCTTTTAGATCACAGTCTCTTCAATT
TACGTAGCACGATTCGAGTCGGAGCTGTGGCTGATGTAGCAGATGTTACTTTGAAATCAA
CAGTACATACAAGTTGCTCACATCCTTTTAAGTATGGGGCAAACATTCAAATTCCAGCAG
ACACTAAAACACTAGGTGATTCTTCCCATCCATCCTAGCCTTGATGGACAGAGTTGCATG
GTATATACCTATTGCTAATGGGAGGTGTCAGGTATCCCATAGAGTCAGTCGAGTCGAGGT
GCATGAAAGCTGGCGTAGACACCCAAAAAAGAAGTAATGGGATAAATGTTTAGCTGTTTT
TAGTTTTGCTTTACAAAATACTTGTGAACATGTTATTCCTGTTCTTACCCTTTTTATCTT
GTAAAGTATCAAGTTGTAAATCTTTTCTTTCTTCATCCTGACATTTATTCAAATGGAAGT
TTTTTTCAAAAAGTTGTGTGTGC
