Microarray Probes on PGSC0003DMT400053645
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_37705_PI426222305 |
JHI_St_60k_v1 |
TGGGCTATTGCTATTCTATCCCTGCCTATACGGAGTTTAACAGCTCTACAAAGGGAAAGG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400053645
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400053645 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G45310.1 |
+1 |
6e-59 |
205 |
136/334 (41%) |
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18359373-18360796 REVERSE LENGTH=352 |
Transcript Sequence (2296 bp)
>PGSC0003DMT400053645 2296 pgsc_dm_v3.4
GAACGTGGTTCTGAATCTTTTATAGGACAATTAGTTATTTATAGCAATTTGCTGGCTCTG
CGTAAGACTGATACTATCATTTTGTCATTATAAGGCTGAAATTTAAGATGATGAAAAAAA
AAGTGTTGTGATTTGAGCCTTTTGGGATGTCCCAAAATGTCAAAAACGATGAAAGTTTTT
TTTAAAAAGGAGTCAGTTCTCCATGCCATGACGGAGACAGGATTTTCACCCAGGGGTTCA
TCGTCTCTGGCTTCGCATTTGAAAGCAGATATTAGTCTAGGCTCTTTGATAAGGTGTAGT
TCTTCCAGCTGATTTTGGATCAGCCTGAGAAGAAATACTATGAGTTTTGATTAAAAGATG
AAATGACAAATTTTGATCAATCCCACGATTGCGGTTAGGATGAGTGGTGAGGGCATCCCT
TTGATGCAAAAGTAGTAGGAGTATTAGATTTAGATTCATCATATTTGCAGTGATGTTATT
AATCAGTGAATTGTTACTATTCATGTTACACATCTTACAGCACCTGTTTTTGTTACTAAT
TCAGTCTGCCATCATATCAAAATTGAATCCACAAATAGAAGATATTACTTGGAAGAAATG
AACTTTGGTTTCCTTTGTTTTACAACACAGGACTTTTGCAAAGATATCTGAACTGGTTGG
CTAGTGGTGAGCTTGGAACTGTTTGAATTCCTCTTGCATTCTATAAGGATAAATTAATGC
CATTTAATTTTTAAGATGGGAGTTTGTTGATTTTCAGAGTGCTTCCAGCATTTGAGGGAA
CCGTTTTCCTAATAATTTTTGTACACATTTCTGTGTTGTGGTTCATTATGTAGCCTTAAA
CTAGTTGGACTTATACCGAGGATGTTCTAAAATTTTCATATTTATCTGGTACTCTTATTG
AAGACTGTGATTTGATCATTCTGTGAATTAACTTCTATACCGAGATTTTGAGGACTTGAA
CATTTTATGCAGATGGCGTACATATGACCACTTTTGGAAGTATAGATGGCAGAGTTACTT
CAATTGGTCAACACTGTTATGATCTTGCTGATCAAGCCTTTGTCACTTGTCAAATTCACT
TGCTTCTTCGGTGTGAGAACAATATGCATTGTTATCCAAACATGGACAGAACTGCTGAGA
GCTGCTATGGGTTTTCATGCCAGATTACTCTGGAGACTGATAATTTGGGCTATTGCTATT
CTATCCCTGCCTATACGGAGTTTAACAGCTCTACAAAGGGAAAGGGCGCTGGAGATGCAT
CTGCAGGAAATGCAGATCGAGTTTGAGAATCTTGTTTGGGAAAGGAAGCAACTTGAGAAG
AAAATACTAGTAGCCATCAAGGATAAAAAGATAATGCAGGCCATGTTAGCAGAACTCGAG
GATGAACATGACGATGCCATCGTCAAAATTGAGCAATTGGAGGACCAGCTTCAGAATCTG
AAGGTGGAAAATCAACGATTGAACGAAGTTCATGGTAAAGCACTTTCGGACCTAAAAGAC
CATTTTGATGGCCAAGTAATGCAAGGTTGTAGCGATGCTGTTCCATTTTGGAGATCAAGT
GGCATTGAGAGCGTTGCCACACACAAGGAAGGAATGCAAGAAGATAAAAGCAAAAGCGGA
AGTACGAGCCCTGAATTTATGGAAGCCAGATCCTGTCGAGATGTCAACCGGCCACGTACT
CAGACCACGTCTGAGAATTTTGACACAAATGATGTGCTACACCAACGAAGGGATCTAGCT
GTTTCCCAGACCCTTTTTAGTGCAATATTATCGCTCTTAGTTGGAACGATCGTATGGAAA
GCTGAAGATGCATGCATGCCTCTAGTCCTCGCGCTATTTGCTGTCGTTGGCATGTCGTTG
TGGAGCGTGGTCCAGTTCTTCACAACCATTAAGAACAGACCCGCGTCTGATGCAGTTGCT
CTCTTGAGCTTCAATTGGTTTTTGCTCGGAACGCTGACATATCCTACGTTGCCAAGGATC
ACTCCTGTATTTGCACCAGTGTTATGGACTCTCTCAGACAGGGCTGTGGAGCTGCTAGGT
TTCTAAATCTTGAGTTTTTTGCTTTTCGCAGTCGACACATACTACACACTGTTTTTGGTC
CTCTTGATGCTTGTAAAGTAAAAGTTTGTCAAAATGTTTGTTCTTTTTGGGGTCTTGTCT
TGTAAATTTCTTCTGAAAGAGTTTGATTTTGCTTAAACAGTTGTGTTATTGATGTCGTGG
ATGATAAGTAAATGTATAATATCCGTCTTTTATTAGTTCTCCAGCTACTGATGACACCAT
TACCTATTGAGTTAAT
