Microarray Probes on PGSC0003DMT400052283
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_11530_PI426222305 |
JHI_St_60k_v1 |
TTCATGGCGTCCTGTTAGACATACAATTGATAATTGACAATACAACTAGTTGCTGAGGAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400052283
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400052283 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G04039.3 |
+1 |
8e-19 |
87 |
43/57 (75%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1333464-1334457 FORWARD LENGTH=206 |
Transcript Sequence (2100 bp)
>PGSC0003DMT400052283 2100 pgsc_dm_v3.4
TGAGGGACCAATATTCAGTGGCATCCAGTCTCCTAACAGTGTGTGGATGAGAAAGCAGGC
AGTATTTCTGATGTTGCCACTGCTTCACCAACAAGTAGTAAGCAACTCAACTCTACAATG
CTGTAAGAAGATAAAAGACAATAACAATTTCCAAAGGGACATACATGGCAACAACAGGAG
GTTCTATTTCACTTTCTAGCTTCCCTTCATCATCTTTTTGCCGTAAAGCTAAACCCATAT
TGCCTGCTGATTCACTTGAACTAAGACACCTCAAAACGTGCAAATGTAAAATAATAGTCA
GAAATCTTGTCTGCTTTGCAGCCCAAGAATCTTCATCTGTAACTGGTAATTTTTCACTTC
TTCTTTTTTGTGAAATTGGTGCTTTTCATGGCGTCCTGTTAGACATACAATTGATAATTG
ACAATACAACTAGTTGCTGAGGAGAAGAAAGAGTCTCAGACTGCTGAAGAAAAACCAAAG
CCAAAGGCAAAGGCTCCAGACAAGCCTCTACCTCAGATGATGGAGGAGGATGTTATTCCT
TCACTGAAAGCAATTCTTGAATCTCAAAACGACATCCTTGAGCTTGAGCTATCATTTAAT
GACAACAAGCTGGAGGGCTCATTTCTAAAGAAGGGCAATCCATATTCATTTTGGGCATTC
TTTCCGGATGGACTCACAGGTCCTAAAGGTTTCTCTTTGTCCTCCTATGGTTCTGGCGCG
AGCACTGTGGAACCTTTTCTCGTTGATGAGAAAAAGATAACAGCAAAGCACATTGTGTTC
TGGGTTGAGAAGCGCTTAGCTGCCCAAGGAATTATTCCTGTCTGGAAAGAATAAGTGTGT
ATATTGTCTCTTACCTTCTCCCTTTTCTTCTTTCATTTTTCAGTAAAAAGGTCCATATGT
ATTTCCATTTATATGTAGTCAACCCTTGCTCTTCCTCTTCCACTGTGCAATTTAATATAA
CAAATGTACACTTACCAAAAGAATGAAATTTCACGTTTCCTCAATGCCAACAAAATATTT
CAAGACTTAGATTTATAAAATTGTAGAATCTCATTAAACATACAGCATTACAAGTACATT
GCAAATAGAATGCAACAGGCACACACACAAGGAAGAGTGTCGACTTTTAAATGTTCATGG
TGCTAGCAGATGCTGCCTTCTTAAACAAGCAGTCTATCAGGGTTGATAATAACTCACAAC
AAGTGTCTTACCATTACAATGCAAACGCATCGGAACAGCCTAAGTTTGGAGAAGTTTTGG
CACTTGAAGCTAATAATTAGGCATCGAACTGACACTTGTACCCTGTATTGCAAGTCGAAG
CTCACTTGAAAAGTCCTGCAACCCAGGGGAAGATACACCTCCAGCTTGTAACATCAACTG
ACAGTGAAAACTGAATATCCAGTGGTCATGGAGAGAGAAACAGAAGGTTGGGGACAGGAG
CTGGGACACAGCAAAACTGCCTCTTACCTGGTGCGGAAGCATAGATTACCCCCACGGTGA
TCTTTTTGTATACATAACTGGCCTTTCTGCAAAAACAAAAGAACAAATGAATGAGTTGTG
ATCACATGTGTGAGGGATGGACAAACCATCAAATTTCATAGCAAGAAGTGAGTGATCCTC
ATGCTTTCACAAGGTCTCCGATAATTCTTGCTGGTCTACTCCTTCAGTCCTCCACAAGTA
AGCCGTAGAAACAATATAAAATTTAAAAATCAACAGAAATAAATTGAAAAAAATTCAACA
CTCTCTCCATGTTTTAACTCTGAGAACTACTGTATTATGACAGAAGTACTGTTGGCACTT
GGCAATTGTGAAACACAACAGGTTGGAACTCTCACAAGACAGTGCTGAAACATTGCATGA
TGTCGTAAAGGAAGCCATGAAAGAAGTAGAGTATGATACATCCTTGTGGAACATGCCAAA
ATATATTTTAGAATCTCCCAGGGGCCAGACAACAAATACTAACACATCAAATGACAAACT
GTCCATTCTCTCCTTCCTCCCCCCTCTTTTGTGGCAAGAATAAACGTTAAGCAAAAACCA
TTATGATCCCACTCCAACCCCCTCCCCCCATTTCCCCTACCCACAATTTTTCAAAAGTAA
