Microarray Probes on PGSC0003DMT400052185
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1071_PI426222305 |
JHI_St_60k_v1 |
CTAGTTAACAAGATCAAAGAGTCGAAGCTGTCTCTCCTGACATACGGCAAATTGAAAAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400052185
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400052185 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g094400.2 |
+1 |
0.0 |
536 |
273/309 (88%) |
genomic_reference:SL2.50ch02 gene_region:49509646-49511664 transcript_region:SL2.50ch02:49509646..49511664+ go_terms:GO:0006629,GO:0006071 functional_description:Glycerophosphodiester phosphodiesterase gde1 (AHRD V1 ***- B6JW52_SCHJY); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase |
| TAIR PP10 |
AT3G02040.1 |
+1 |
3e-126 |
377 |
193/310 (62%) |
senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361 |
Transcript Sequence (1586 bp)
>PGSC0003DMT400052185 1586 pgsc_dm_v3.4
AAAAATTATGCAGTTTGTTCACCACACTAAACTTTATAATACTGATCTCTCTCTATCTCT
GCTATCTTTTTTGGGGATGGATTGCAAATTAATACAGTACATTTACTGTTGCTGATTACT
TGGAGGGGAAAGTAAACAAGTAGTAAATGTCATTTTTTGTAGGTGACAAAGGATGATTGC
CCTGTCATTTTTCACGACGATTTCATCCTCACTCAACATAATGTAAGCTCTTTTAATATC
CAAATACCCTTTCTCTTCTAATAATGTAAGCTCTTTGATCTTGATTCTCATGGGTGCATG
CAGGGTACAGTTTATGAAAGGAGAATTACTGAATTGTCACTTGCTGAATTTCTTAGCTAT
GGACCCCAAAGAGAAGAGGGTGTTGCTGGAAAACCTTTAATGAGGAAAACTAAAGATGGA
AAGATTGTTAGCTGGACAGTTGAAACCGATGATTCTGCATGTACCTTAAAAGAAGCTTTT
GAGAAAGTTAATCCATCTATTGGTTTTAACATCGAGCTGAAATTCGATGATCACATTGTT
TATCAACAAGACTACCTCATCCATGTTCTTAAAGCCGTCTTACATGTTGTATTAGAGTAT
GCTAAAGACAGACCAATCATATTCTCAAGTTTCCAGCCTGATGCTGCTCTGCTTGTCAAG
AATCTCCAGACTTGTTACCCTGTGTTTTTTCTCACAAATGGAGGTACAGAGATTTACTAT
GATGTTAGAAGGAACTCGTTGGAAGAGGCCACTAAACTGTGCTTAGAGGGTGGTTTGGAA
GGTATTGTTTCCGAGGTGAAAGGCATCTTCAGGAATCCAGGACTAGTTAACAAGATCAAA
GAGTCGAAGCTGTCTCTCCTGACATACGGCAAATTGAATAATGTGCCTGAAGCTGTGTAT
ATGCAACATCTGATGGGAATTGATGGAGTGATAGTGGATTTTGTTGAACAAGTAACAGAG
GCTGTGTGTAAGCTAGTGAAAAAGCCAGATGAAGTATTGCTGGAAGGGGAGGAGAAGGTT
CAAAATAGACCTCAATTCTCACAGAGGGAATTGTCTTTTCTGCTCAAGCTTATCCCCGAA
CTGATACAATAACAATTGATGATATGATTGTAGATAACCCTTTTTCTAAAGCCTGAATTG
AATGAGTGCACTCTGGGATTGTCATACTAGTGTAGATGTAGAAATGTAGATTGAGGAGTG
ATAGTGGATTCACTGTAATCATAACATATCTCCAGATACAGAAGCAAATGTTGTTTCCAA
ATCAAAATATTCTATTGCTTGTGTGAATTTTAGCTGGATAAAAAACATGATTATGAATCT
CACTTCAATTAGGTTATTAAACAGTCCGTCATTGCCAACCACCTTTTATGTTTGTTTATT
CCCATTCCCATGTTTAGTTACCAAAGATTAAGATGGATGAATAATGTGACAAATGGTTTG
AAAGGATGATGAAAGAGAGTAGGAAAACCAATTGTCCCTGTGGCTGTGAATCATATTAAT
ACTACAACAGTATTTAAATTTGACATTTAATTTCTAGAGAAAGCAAAGCAAGTGTGTGTA
GGACTATAAGGTATTTATTCTAAAAT
