Microarray Probes on PGSC0003DMT400051532
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_42865_PI426222305 |
JHI_St_60k_v1 |
GTTAAGACTGCCAGGCAGAAAGCTTCCCTATTTGCACTTCACATATTTATCTACTCACAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400051532
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400051532 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G40070.1 |
-2 |
6e-18 |
84 |
37/50 (74%) |
BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:16728378-16731160 REVERSE LENGTH=607 |
Transcript Sequence (891 bp)
>PGSC0003DMT400051532 891 pgsc_dm_v3.4
ATGATGTTCAAAAAGGAAAATGTTGACATTCTGAGAACTCAAACTGGCTCAACAGATGAA
GACCTGACATTAGCTGCTCCAGGTCTGACCCTTGTAGCTGAAATTGGCCTGTCAGGTAGT
GATGTCCTTAAATTGGGTGGAGCATCAAGGGAGAACCCTGGTATATCTGAAGGCTTCCAT
GGTCTGGGTTTTACAGTTGGAGAACTAGCACGTGAGGCTGCAGGGTTTCGTGATGCCGTT
GTAGCTGACCTGGTACCCGAAGGGGAATACATAGATTTAACTGGAGGAACAGTTGTATTT
GTTGTACTTGACACTGAAGTTGCTCGACGAGTTGGAGTTGCTGCCCTTGATGTGGACTTT
GATCCAGTAACTGAGGCCCTGGTTGTTGGTGTTGAGGACCGTGCACTGGATCTTGCAGTA
GGTGTTGAAGATCTTGGAGGAACAGTGGGTTTTGCAGAAGGCATGGTGTCCCGAGAAGTA
GGTGTTGCAGACCTTGATGATCTAGATGCTGTCGTGGTTGACATTGATCTAGAGGTTGCA
GTGGATGCCATTGCTTTGGTTGCTGCAGCAGATGTGGATCTAGATGCTGAGGTCGAGGTG
GATCTAGATGAGCTCAATGTCGGTCTACCAGTAGGAGTTGAAGGTCTTGATCCACCTGAA
GAAGATGGTCTTCGAAGAATAGAACTTGAAGTGTTTAATCCGAGAGAGGAAGCTAGCTGT
CTAGATGCTAAGTTGCTTCTTGAGGTGGCCTCTAGGAGAGAATTTGTTAACTGCATCAAA
GTTGGCAAATTACAGATAAAAATATATCAAAACTGTGATACACTTCAGGTTAAGACTGCC
AGGCAGAAAGCTTCCCTATTTGCACTTCACATATTTATCTACTCACAGTAA
