Microarray Probes on PGSC0003DMT400048729
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_39522_PI426222305 |
JHI_St_60k_v1 |
ATATGAGGCCAAAGTTGCTGCCAGGAAAATATTCAGAAATGTTGCCAAGCCTAGGTCCAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400048729
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400048729 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G78610.1 |
+3 |
3e-132 |
424 |
246/463 (53%) |
mechanosensitive channel of small conductance-like 6 | chr1:29569226-29572126 REVERSE LENGTH=856 |
Transcript Sequence (3025 bp)
>PGSC0003DMT400048729 3025 pgsc_dm_v3.4
GTCAATACCATAATTAGTCAATCCCAAGAAAACCATATTTTATTTTACTTCTCTCAACAC
AACACAACATAAACTTTATACCCCACCTTCAATATAGGAATATAACGTTTTCCAATTGCA
GCATTTCCCATAACCGAAGCATTCATCCAAAACCATGTTGTTTTTTTTCAGGCTGAAGGA
TTAGAGGAAATTAATTAAACCTCAAGAATACATAGGAATTATAAATCATGGATCAACTTT
CTTCATCTCTCAAGAAATCATTAACACCACACGGTTCTTATAAGAAGGTCTCTGCTGCCC
ACGATATCGAAAACCAACCTATACTGGCTCATCGAAGCCCGGAAGCCCCGTCTTCTTCCT
CCTCCATCAACTCCTCCTCGTTGACGACAAGGTCCTCCATTGATCTTAATGACCGACGAG
AGGTCATTGTCAAGATTGATGGTGGAGAAAAAAACAATGGAAATGAACATAATATGTTAT
GGCACGAGACGAGTTATGAATTTTGGAGAGAAGAAATGAGTAACGGGCCCCAAAACAACG
TCCCGAAGACATTCCAGCGTGGCAAGGACATGTCTGAGGATCCACCCTCCAGACTAATTG
GACAGTTCTTGAATAAACAGAGAGCTGTTGGATGTGAAATGACATTGGACATGGACATGG
AAATGGATGAGCTGAGGAGGCATCCGAAACCTGAAAATGATCATAGCGCTGCTGGATCCA
GTCCCCTAATAAATTTCCCCCCTGATCACACACACAATCATAGTCATACGACATCAAGAG
AACTTAGAGTTTCATTTCAGGATCCGTCACCATCTAGTAACGTGGTTGACATCGAGCCTG
ACCAACCTTATAATAATGATTCATCGAGCGATGAAGAGGATGGTGCAATTAGTGATGCAA
CACCCAATGAGCAAAAGCATCTTAACCGAAGAAGGACCATAAACATGAATAATTCTCCAG
ATGATAATAATAACAGCAACACTGCTTATTACACTCCTAAAAATGGTGCTGGTGAAAGTG
ATCAGGTGCTAAGGTGCACTTCGTTTCAAAGAAGAGCGAGTGTATTAGGGAGAGTAAAGA
CAAAATCAAGGCTAATTGACCCGCCGCCTGATATACCTGAGAGGAGATCAGGAAAAATAG
GAAAATCTGGTCAATTAAAATCTGGAGTGTTAGGAAGAACTTCGGGGATGCTAAAGCCAC
CAGAGGAGGAAGATGACGATCCGTTATTCGATGAAGATCTTCCAGAGGAATTTAAAAAGG
GCAAAGTTGATTGCTGGACGCTGTTACAATGGATAAGTCTTATTGTAATTGTTACAGCTT
TAATCTGCACACTTACTATTCCTTTGTTGAAGAGCAGAATATTAAGAGGACTTCATTTGT
GGAAATGGTTAGTTTTGGTTCTTGTTTTAATATGTGGGAGATTGTTATCAGGATGGGTGA
TTCGGTTAGTTGTGTTCTGTATTGAGAGGAATTTTCTATTGCGGAAAAGGGTACTATATT
TCGTTTATGGTGTTAGAAAACCTGTCCAGAATTGTCTTTGGTTAGGGTTGGTTTTAATTG
CTTGGCATTCCATGTTTGATCAGAAAGTTGATACAACTAATAAGTTCTTGGGGTACATCA
ATAAACTGATGATATGTATGCTAATTGGGACAATGTTATGGTTGGTGAAAACTCTCATGG
TTAAAGTCCTAGCATCTTCATTTCATGTTAGTACTTTCTTCGATCGAATTCAAGAGTCAT
TGTTCAACCAGTATGTGATTGAGACATTATCAGGTCCGCCTTTGCTTGAAATCCATCGAT
CTCAAGAAGAAGAGGACAGAACATTGGCTGAAGTTTGGAAGCTACAGAATATTGCAGGGG
CACAGTTGCCACCAGAACTTAGGCCCCCACTTGCTCCTCGATACAGTAGTAAAGGTGCAA
GTGTTAATGGTGGGCAAACACCAACACCAAAACCATCAAGAACAGTAAGTATCGCCATTT
CTGGTCCCTTGTCAAAAAATCCAGATGAACCGAACCAAGGGATATCCATTGATCATTTGC
ATAAGTTGAATCCCAAGAATATTTCAGCTTGGAATATGAAGAGATTGATTAAAATAGTAA
GATATGGGGTAATATCTACGTTGGATGAGCAAATACATGATACCAAAAGAGAAGATGATT
CTACTACACAGATAAGAAGTGAATATGAGGCCAAAGTTGCTGCCAGGAAAATATTCAGAA
ATGTTGCCAAGCCTAGGTCCAAGTTCATCTATCTGAAGGACTTAAGTAGCTTCTTGCGAG
AAGAAGAAGCTTTGAAGACTATGAATCTTGTGGAAGGATCACCGGACAGAGAAAAGATCA
GTAAAGCATCACTCAAGAACTGGGTGGTAAGAAATGATCATAGAAGCAATGGATTTAACA
TCTAAATCACTTTAAAGGAAATTACCCCCAATCAGTGGAACTAATATAACCTGGAAATAA
GACAAGGACCCTGCAACAACAAGTTAAATTGCACTGACTGTATGCCAGTGGATACAAGAT
ATATCCGCAAGGAGTTTAACTGTACCTTTTTGCTCATTAATTCTTGATGAAGTTGAGCAC
ATACTCTTGTGATCTTATCAAATTGCATACACAAATAGGAGTATCAAATAACTATCCTTA
ATTTTTGTAGGTGAATGCATTCAGAGAACGGAGAGCTCTAGCTTTGACGCTAAATGATAC
AAAAACAGCAGTGAACAAACTTCATCAGATGGTGAATGTTTTAGTCAGCATCATCATTCT
TGTCATCTGCCTTGTGATTTTAGGGATCGCAACCAGCAAGTTCTTGCTCTTCATCAGCTC
TCAAGTCGTTGTTGTGGCATTTGTATTTGGAAACACATGCAAAACCATATTTGAATCTAT
TATTTTCTTATTTGTGATGCATCCCTTTGATGTGGGCGACCGATGTGAGATTGATGCAGT
TCAGGTATATAGCATACTTTCTTGATCTTTTTTCCACTTTGAAATGTCTATTCAACCATA
ATAATACTCCATCCTTTTCATTTTA
