Microarray Probes on PGSC0003DMT400048424
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_27330_PI426222305 |
JHI_St_60k_v1 |
GCACAATTCATTTCTTGAGTGAATATACATGCTTGCTACTTCAGAACAACAACGATTTGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400048424
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400048424 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G62350.1 |
+1 |
3e-68 |
230 |
110/140 (79%) |
Pentatricopeptide repeat (PPR) superfamily protein | chr1:23056653-23057935 FORWARD LENGTH=196 |
Transcript Sequence (4026 bp)
>PGSC0003DMT400048424 4026 pgsc_dm_v3.4
TGGAGATGGAAGTTATCCACTTTCATTAATCATTTATATAATGTTTATATTGCTGACTTT
TACTCTTAAATTTTGCAGTTGTATGAGGCTGTGCGCAAAGAAATATGGTATCGGCCAGAC
ATGTTTTTTTACAGGGATATGCTTTTCATGCTTGCAAGAAACAAAAAGGTAGATGAAACA
AAGAAGGTATGGGAAGATTTGAAGAAAGAAGGGGTGCTTTTTGATCAACATACATTTGGC
GATCTTGTCAGGGCTTTTCTAGATGGCGGATTACCTTCAGAGGCAATGCACATATATGAT
GAAATGAGGCGCTCTCCTGATCCTCCTATGTCTTTACCTTATCGTGTTATGTTGAAGGGG
CTACTTCCTTACCCCGAATTGAGAGAAAAAGTGAAGGATGACTTTCTGGAACTGTTCCCA
GATACTGTAGTTTATGATCCACCTGAAGATCTATTTGATGAGGAGTGCAGAAAGGAGAGC
GATGATGATTAGAATATGCTGTCAACTCTGATTTTCTCAATGGCATTTGAATTTTCCTCT
GGTCAAGAAGATAGTGGAATGGTAAATAGGGAATGCACTGACAGCAGATCATGAAATTGT
TTAAGCTGCTGAACTGATGGGTGTTTCTGCCTTTGAGAATTTGAAATGTGACCCACGAAG
ACCGTGGAATATTGGAAGTTGATGCTGGTATGATCTTACCTATGATATCTAAACTGAAGG
TTGGTTGAATGCGTCTGATGAAGCGGATATATCATTTTCTGCAATTTGTGTTGGAAGAGA
ACCTGCCGACGTTCTTGGTTTCTCCTTATTAAGGTTTACTTTGATCAAAAGTTTATGAAT
TCCTGTCATTGTCAGTGATTATCACCATCTCATTCAGTTATTCTTATGAGATGGTGAATG
TTTTGTTAGGATAAATGCTCCACCAAATAAATTAATTAATATATGGGTTAGTCATCCAAA
TTATTGGTTTCGGTATCCTGGTTCTTCAGGGCACTCTGGTTTCTGCAGTTCTATTCTTGA
ACTCTAGCAATATTTCTTATAGTCATACCATGCAATTGACTTTTGATCTCGACGTGTTTG
AAGTATCAGGCCATGTAATCATTGGATAGCATATTTTCAAGGCATGTCTGTCTACATTTC
CTGCTGTCATCTCTTGCAGGGCATTTTGCTATATACTCTGTCGAAGTATTCTTACCAAAA
AATTGTCGCTTCAGTCCCATCAATCTTGAAATTACACTTGGCCAAATTGAGCAAGAAAGT
ATAGTCTTCAGTTAGAGGAAGCTACTCTATTCTATAATCACAAACTGCTAGTTTCTCTGA
GATTTTTCTTTTGGGGTTTTCAATATGTCAATATTACATATTTTGTTGCTATGAAGTTTT
TGCTTCCAAGATCGTACCTTGGCCATCAAGCACCATAACGTCAAATGGAGAACATTATTC
ATTTTGAGGCACCTATTTGTTCGTCTTGGAAGTTGAATGGATTTCATTTAGAATTTGGCT
GTACCAGTCTCATGGTGCTCGCTTATTATGATCATTTGTCCTTTCAGAACAACCCAGAGA
TATGATGTTTTCTGATTGACCATTGACAAACCAGCATTCTTTCATGTTCAGGATGGAGTC
TATTTCTGCCTGATGGTCTAGAACTTTGAGATATGTACCCCATTACCTTTACACAGTTGT
ATCTTATTTGCTGGATATGTTCTTTAGTGAGATTTGTCTCCTCTTTTAAGTGTTAAAAAT
CGAATGCCCAATAATATGTCAAATTATAGACTATTGCACAGTTTTCAAGTCTTAATGTCA
GTAGTATCAACCATTCTAATGTTGGAACATAATCTAGGCTATTCCTGCTTGTACTTGAAA
TCCTATTTTGATAGAGACAATCAACTCTTACATTAAATAGGAAAGAGAAGGACTGAGCAT
AAAAGACTATAGCAATCATTTCTGTTGAATCCAGCACTCTTAGGTTTGAAGCAGGAGCGG
ATCTAGCCCTAAGGTATGCGCTCAGGGGACCAATATCTTTTGTTCATACCATGTATTTCT
ATTGTGAACCCAGTTATTATTTTATGTTAACTTGAAATCATTGTAGGAATCCATAAACTT
CAAAACCTGGATCCATCACTGGTTTGAAGTGATATAAATATTTGCTATGATGCTACGATC
TAAATGTTCCTGCTGTACTACTCATAATGAAGAGATTATCATGCACCTTTTTTTCGTACA
AGACAGATTGCAAAACATATTTGGTCCTTTGGTCAAAGTTGTGGTATAGTAATTAGAAAT
GGTGGTAACATGAAACAATTACTCATGTTTAGTGACTATCTAAAGCTAATAATGGTATCC
ATGCAGTGCTATTTCAATGCCTCCCAACTGTTATATGCTGGGAGATAAGGAAAAATAGAT
GTGGTTGCTAGGTATGATAATGTTCACATGTCTGGCAGAGTTATATTATTCAGCAGGTCT
GTGAAAACATGACCAAAATTTTTATAGCCAATTTCCCAGAGTCCAATTGCCTCTATCCTG
AAATTTGATGTGTAATGCAGTGGAAAAGGCAAAACAAATAATCAGTTGTGGACCGGTTAG
ATGGAATAAGCATGAGTTTGAATGGCTAAAACTAAACATTGATATCAGGCTGTTGTAAAG
GGAATTGGGAAGCTCTGGAGGAGGTTGTTGTATCATTAGGGCCAACCTTGGCTGCTCTGT
CCTGGCCTGTGCTGAATAATATGGCCGAGGGCAGAGTTCTTTTACAGAGTGTGAAACTGT
GTATTTGCAGAAGTTCATTTTATGTGATGGTGGAATCTGATTCCCAGTTGATTATTAACA
TGATTAACAACAAAAAGAAAGCACCTTGACAGATCCAACATGCCATTGATCAGATTGTTC
ACCTCTCAAGTAGTGTTATTTTGTATTTGTCCTCACATACTGAGTGGGAGAGGAGATATA
AACTAGCCAATATGGGGAAAGGTTAAGAGATCAAGTTACATTTGATGAAGCTATTTCTCT
ACCAGAAATAGTGAAATCAACATTGTAACTTGATCAAGATTGTATCCCAAACTATAGAAT
AAAACCAAGAAATAATCATTTTTGTATAATGATGGTAACACTAGATAATACTGACTCCTG
TACAGTTTTGGTAACTGTGTGCATAGCATCCTTTTGTGAAGCTTATACTAGTCAAAATGT
CATGGAGGTAATCTGTCAAATCAGGCAAATATTTTTTAAGATATTGGTCAAACCATTAGA
AGTTCCTCCATGGGTCCAAAATTAGAGGTAAATTACCAAGTGTGAAATGACTAAACTAAC
AAGAAATGAAAAGGCTAAAAAACATGTACTATATATATATATATATATAAACTGTCATTC
ATCAATGACGTCGTAGTAGTCAGCTATTGCTGCGGTGCAATGCCGCATTCGCCAAGGATG
TGGAGTTCAAAGTTCCGGCGAGTGGAACTGAGCAGCAGGTACAGTTGAAAAATGATGAGA
CGACGGCGCTACTAGATGTGAGCGGGATGATGTGCGGCGCGTGTGTCTCACGTGTCAAGG
CGATTTTATCAGCGGACGACAGTGTTGACTTGGCTGTGGCCAATATGTTGACCGAGACAG
CTGCGGTTAAGTTGAAAGCGGATGCAGCTGAGACTGGTTTGGCGGCTCAAGAGTTGGCTA
AGAGGTTGACGGAATGTGGTTTTCCGATGAAGAAGAGGTAATCTGGGTTAGGAATCGATG
CCAAGGTGAAGAAGTGGAAGGACATGGTGAAGAAAAAGGAGGCGTTGCTTGTTGAGAGTC
GTAACCCAGTGGCTTTCGCTTGGACTCTGGTTGCTTTATGCTGTGGAACTCACGCTACTC
ATATTTTGCACTCTCTTGGCATTCATATTCACGGTAAACTTGCAAAAGATGCACAATTCA
TTTCTTGAGTGAATATACATGCTTGCTACTTCAGAACAACAACGATTTGAACACTTGATT
TAACAGTTTGTAAAAAATGTTGAAAAGAAAAAAGGCAAATACTCTTACCCGGTTCCATAA
TGATCA
