Microarray Probes on PGSC0003DMT400046766
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_11742_PI426222305 |
JHI_St_60k_v1 |
CCACTGCTTGACTGGTATCTGTTCTTATGTTTTTAGGAGGTTCATGTTATATTTCCATAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400046766
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400046766 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G48200.1 |
+1 |
6e-140 |
438 |
279/474 (59%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:17832949-17837371 REVERSE LENGTH=1088 |
Transcript Sequence (1846 bp)
>PGSC0003DMT400046766 1846 pgsc_dm_v3.4
GCATGTACCTGAAATATTTATCTCAAGCTTATAAGCAAAAGATCGGAGATTTAGCACGTG
TGAATGAATAATTCATCTGATGTTTTCAGGTGGAGGGATTTCAACAGAAGCATGTTTTGG
TTAGCTGTTATTGGGGGCAGCTTGATATTGTTGCATGCTTTGGTCCTTTTTGTTTTAAGA
CTGAGGAAGGACAGAGAAAAAAAGTGGAGCTATGGAGCCTTGGTTTTTCCAAGATTTGAG
ATCTTTCTTACAATTCTGGCTATACCTTGCATTTGCAAAGCCTCAGTAAATGTAGTTAAA
GGAGGATCATCTGCAGGAATTGCTGTTGGCATTTTGCTGTTGGGATTAGTATCATTTCTA
TTGTTAGCATTATTTTTGTTCCTCTCTATTGGAATAACATTAGGGAAGCTACTGCAGTAT
AAGGAGGTACACCAAGTAGGGCAGAAATTCCATTGGTATGAAGAATTAGTCCGAGTTACC
CTAGGTCCTGGTAAAAGAGGTCAGTGGACATGGAAAAATTCGCGCGATTCTAGACATATA
GTCATGTTTGGGCCTCTGTTTGAGGATCTAAGGGGTCCACCAAAGTATATGCTCTCTCAG
ATTGCAGTAGGAAATCCTAACAAGCATCCTGACAAAGTCATTGCAACAGACGATGAGACG
GAAGATGCGGAAGCACCTTGCATCCAGAAGGTGTTTGGGATTCTAAGAATATACTTCACA
TTTCTTGAATTTGTGAAGCGTGTTTGTCTTGGAATTGTTGCTGGTACTTATTTGAAGAAT
TGGTCTTCAAAATCTCCCATAGTTGTCCTGCTTACCATCACTTCTTTCCAGCTATTCTTC
ATGCTTCTGAAGAAGCCTTTCATTAAAAAAAAGGTTCAGTTGGTTGAGATCATCTCAGTT
GCCTGCGAAACAGGTATTTTCGCTGCTTGTATTGTTCTCATAGGAAGAGATTCGTCCAGA
AATGAGACAGCAATCGGTATCACCATGCTTGCGCTTTTCTTCATAGCATTTTTATCTCAG
CTTGGAAATGAATGGTATGCATTATACAGACAGACAAAGAGACTCGGTGCTGAAGACAAG
TCTTTCTGCTCTGGTCTGAAAGCAGCATCAATTGGATTCCTCTTGTTTTTCATTCCTCAA
AGATTGATCAGAAAGCTTGAAAGCGGGTCTGCACTGTTAGATCGTGTACTCAAGGAAACC
GGGGATGTTACTTCATCTTGTGACAGGAACCGGAGTTCTGGTAGTAGAAGCTCAGGTACT
GATAGACCATGGCATAAGCAATTCAGAGAACTAGCAAAGTCCAGCTTTAGTAAAGATAGT
AATGTAACTACAAGTGATCCGTCAACAAGTCGTGTCAGATGGAGTGGATTTTGGAACCCT
AAGAGAAGTGGGAGCTCATCAAAAGATTCATCAGCAGACTTCAAGTCAAAACCAAGAGGA
TTGCACAAAGATTTAGAAGCTATTTTTGCTTCCAAGTCATAGACCTCTCTTATTCATACA
ACATTATGGAATACATGAGACTAATATTCTGGCTTTACTGGTTACTTGACTACAAAGGTG
GATCTGAAGCGGGTTCTGTGAATTCAACTGAACCCTTTGCTTCTAGTTCGAACTATGTAA
CCATGTATTTGTATGCAAAAAAAAGAAGAAGAAGAAGAAAATGTATACATATAATAAGAC
TACACTTATTCTGAACTCATTGACTTAAGTTTTACCTGAGCTTATGTATTTATATTTTGG
ATTGGATTTGCCACTGCTTGACTGGTATCTGTTCTTATGTTTTTAGGAGGTTCATGTTAT
ATTTCCATAATAATGTATAGCTCTCAAATATAAATGCATGTTGTCT
