Microarray Probes on PGSC0003DMT400043661
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_38319_PI426222305 |
JHI_St_60k_v1 |
GAGAGTTTTCGTTATGGCTATGAATCTTGAATTTCATATGGCAAAGGAGTATTCATTTGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400043661
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400043661 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G71780.1 |
+1 |
5e-59 |
190 |
93/159 (58%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26995406-26996638 REVERSE LENGTH=197 |
Transcript Sequence (896 bp)
>PGSC0003DMT400043661 896 pgsc_dm_v3.4
ATTTTTAACGACCTTCCCCTCTGGCTTTTCCTTTTCTCCATTGCCATAAAAATGGTGGAG
ATCACAGAAGCTTTCGCCGGCAGCGACGCCGACGAAGCGACTCCACTGTTATCGAATTTA
AAACCTAACCCGAATCCGAACCCGCCAAACCGGACTAGATCCGTAAAGACGAAGGTCCCG
GAGGTGGAGGTCCACCTGTACCGACGTGGCAAGGGTCCCATCGATGTATTCAAGGCATAC
CTTGGTGGGTGGGACCAGGATCAGCTCGATGTTAGGGAATTTCTCGACAAATACGGGTTC
AAATCGGTTTATGCATTCAAGCCGGAAACGGGTCGGGGCGTTCCGATCCGGTTTAATACA
CGTAATGGAAGATCCATTATTACTTATCGAGATGGATCCACCATTTACATTGATGGAGAA
CCTAAGGACTCGTTGGTGAAACCTATAACCAGAATATTGGTCGGGGTTGCTGTTGTTGCC
ATACTTATAGTATTACTGGTGATAAGAGACCCTCCAGAGTGGGCAAAAAAGTTGAATCTC
TCTGATGGTCGTATCCCTCCATGGCTTCTGGCTTGTGCATTTGTTGCCTTCACACGCATG
AGGAAGAGAACCAGAGATTTCTTGGAAAGTCGTCGAAAATAAGCTGGTGTTTGGCACTGG
TAATTCAATTTTCTCAAAATTTTGCAGGCCTTCTTTGTCTCTTGTTTTCTCTATTTTTGT
TGTATTCACATATAACAAAATCATTCTAATATTATAACCCCGCGATCGCGAAGGTATATA
TTCCCATTCATTCTTTTTTCTCAATGTGTTGGAGAGTTTTCGTTATGGCTATGAATCTTG
AATTTCATATGGCAAAGGAGTATTCATTTGCTATTCTAGTTTACTAATAATACGAA
