Microarray Probes on PGSC0003DMT400041206
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_3442_PI426222305 |
JHI_St_60k_v1 |
TTGGAGATGGAAATCCTTTCCACTGCATCAGTATTTCTTCAATATGCTCTGGATTTATCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400041206
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400041206 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G19875.1 |
+1 |
8e-12 |
60 |
44/86 (51%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:6718412-6718783 FORWARD LENGTH=123 |
Transcript Sequence (627 bp)
>PGSC0003DMT400041206 627 pgsc_dm_v3.4
CCTAACTCTTCTATTATATATACATAAATAAAAACCATAGTCTTGTCCAAGAACCTAACA
AGTGATCATTCAAGAAAAATGGCTGATAACTACTCTTCACAACCTCTATCAATACACATA
CACTTGTGTTTCTTCTTTCTTGTTCTTTTGACATTTGTAAGTATTACATGGTACATCAAC
TATGAGTCTATATTTGAAGGCATTATGGATCAGATGAAGCTTTTTCTCATGTTATCTCCT
TTACTGCTACTTTTAGTTTTACACTTGGATAAATCTCTCTTCTTTAATTCCTTCCCTGAT
CAAGAATCCTTTGGTGACACTCCATGGGGAGTTGGATTGCTCCTTGTGCTTCTCCTTTTC
ATGATTTCCTATCAGTCTGATTTTCGCGAACGATGGTTTCCTCTTTTAGGTTGATATATC
ATTTCTTTATTTGTAACTTTCACTACCTTGTATATGCTTTCATTTGGAGATGGAAATCCT
TTCCACTGCATCAGTATTTCTTCAATATGCTCTGGATTTATCTTATTTCTATGGACAATG
TAAATGAACTTCTTGTGTTATTATCTTACTTAATTGATTTCACTACTTTTAAAATCATAT
ATCCGATTGTGTAATTATGAGTCTTGG
