Microarray Probes on PGSC0003DMT400030404
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_47145_PI426222305 |
JHI_St_60k_v1 |
GCAGAGTTAGAGCTGGTAGAGGAATGGATTTATTTTGTACACATTTTTGTTTAGTAAGAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400030404
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400030404 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G56360.1 |
+3 |
5e-39 |
139 |
77/187 (41%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20896641-20897342 FORWARD LENGTH=233 |
Transcript Sequence (894 bp)
>PGSC0003DMT400030404 894 pgsc_dm_v3.4
TTCAAATTTCACTCCTCAATTCCCTCTAACAACCCAAAAAAAATAAAAATCAAACCATTC
CGGGGAATTAAATAATTCTTAATTTAATTCCCCGGTACGAGTAACGATTTTCCCCAAAAA
AAAAAATGGCATCGTTACACATAAATCCGAGTGTGTCTCTAGGTACATTGAATAAAATTG
GAACGATACAAAGAAGATCAACAGCATCCATGATACAAATGAAGCATGTTGGTGTTGTTT
CTGCTTCATCTCTGTCTCTATCAAATTCGCGACCCTTAGACAGGGTCGCGAAAAATGATG
CTAGAAAAAAGGAAAAAATAATATTATCGAGAAATCTCGATGATTGGATGAATGCGTCTA
TGGTTGACATTGTTAAGAATTTGAAACAAGCACCATTACTTGTCCACATTTACGCGAATG
AGGAGGAGGATGATGATGAGAGAGAACCACAACGATCATCACCACTTTGCATCAAAACAG
AGAGAGCTCTGTTTGAGAATTGGCCAATGATGAAAAATGAATGGGAAAGTGGAAAAACAA
GAACCCCAGATGGATTGATTTTTGTTGAAGAACTTCGAGATGGTGAAAATAATGAAAATC
ACAATATATTACAAGAAGATGCAGATGAAGTGTTGACGAAATCTTGGGGTGTAATGGTAC
AGGGGAAAGGAATTGATGAAACTGGACCTGCTTGTTATTTATTGAAGACTAGCAGAGTTA
GAGCTGGTAGAGGAATGGATTTATTTTGTACACATTTTTGTTTAGTAAGAGTTAAGAATT
TTAGGGAAAGTGCTTTGAAACAATTTAAAAGTTGTTGGTTGTGACAAAATTCATAGTAAT
TGTTATGGTTTTAATGCTTTTATTTCTTTATCTCAGATTGATATTTACTGTCGC
