Microarray Probes on PGSC0003DMT400030201
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_8297_PI426222305 |
JHI_St_60k_v1 |
CGAGGATAAAGAATTCTGTTGTGAAGAAAATGGCAACTTCTTATATACTTCTGAGACTGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400030201
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400030201 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G33800.1 |
+2 |
9e-10 |
58 |
55/165 (33%) |
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16210404-16211307 REVERSE LENGTH=170 |
Transcript Sequence (1638 bp)
>PGSC0003DMT400030201 1638 pgsc_dm_v3.4
CTTAATTGGCAATTAAAACACTCCAACTCATCCCCATTGTGTCTCGTGGACACCCGACGC
TGACGTGACACACAAACTTTCGAGGTGTCTTTGTAAGTTTGAGTGTTTAACTTACATAGT
GAAGGTGAGTTGAGGTATCTAAATGTGCATACTCAAAGTTAGAGTGTTAACTTGTCAGCC
GAAGCCAAGTTTGAGTGTTCGTTTATATATTATATCTTTCATATGATTGACTGCAACTTG
CTTGAGATTGAGGTGCCGTAATTATTGTAATTCTTATCACCTTGTGTTACCAATATCAAT
TGCCATTGGCCATGATTCATTTCTCTATTTCCCTACCCCATGACTAAGCCAACTGGCAAC
TTTTGATTCTTTACAATATTGAGGAAAAAAATAAAGAAAAGGTAACAGATAAAGCATAGG
GACAAAACTAGTCTACTATTTGAGTGTGCTAAGTTTGGTTGGTTCTATTATACCTTGCTC
TTCTCTTCTCCCCACTTATAAATAGACTACCAACAAAGAGAATTCATCCCATATTAGTCT
TTTAATTCTTTCTTTATTGAAGTACTAGCTTCTCTTCTGTCATAAATAGCCTTCTGTTTT
TTGTTTAAGTAACAAAGCTGAAATCTTGATGGACATATCAGGTTCTGGATGCACTAGTGA
GTGTGAATCTGGATGGACAATGTACTTTGATGAATTCTCATATTCTTCAGATCAATTCAA
TGGAGTTAAGGGGAGAAGTATTTATGATGGTAGGGGAAGATCAGCATATGTAGATGAAGA
TTTGTCTATGGTTTCTGATGCTTCATCTGGTCCACCACATAACAATTTCCACGAGGATAA
AGAATTCTGTTGTGAAGAAAATGGCAACTTCTTATATACTTCTGAGACTGAAAATACAAA
GGAGAAACAGAAAAGGGAAATGAAAGAGCAGAGTGGAAAAAAACAGAATCTTTATCTTGA
TGACACTGCTAGTTCTCCTGTATCAAATTTCCAAAAGGATAACACGGGTTTTTATAATGA
TACTACTTACATGGAGCAAGTAGCAGGCAACTCGGGAACATATTCGAAGGGTAAATCTGT
TCTGGGGAAACATTTTGGTTTCTTGAAAACATCTGTGAATGGGAAAGCTTCATCTGAGAA
ATCTGGTGTGTGAATGTAGTTAAAATCTATGTTGCTCGGACTCTCCAAATAAATTGTTGT
ATCCGTGTTGGACCCTCCAAAAAAAGCACCACTTTTGGAGGATCAGACACGCACCCAACG
ACATTTTTTGAAGAGTTTGAGCAATATATGTTTAAATCTATGTTGCTTGGACTCTCCTTA
AAAACTGTCGCACCTGTGTGTATCCTCCAAAAGATGCATTTTTTGGAGGATCCAACACAC
ATCCAACGACATTTTTGGAAAAACCTATGTTGCTTGATTGAATTCTTAAAAAAACTATGT
TCATGTGTTAATACTCCAAGAATGCACTGTTTTTGAAGGACCCAACATGCACACAATGAC
ATTTATGAAGAGCCCGAGCAACATAGGTTAATATCTATGTTTCTCGGACTCTAAAAAAAA
CTGTCTAACCAGTGTCAAATCCTCCAAAAAAGCATCACTTTTGAAAGATCTGACGCACAC
TCGACGATGCTTTGAAAA
