Microarray Probes on PGSC0003DMT400028816
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2336_PI426222305 |
JHI_St_60k_v1 |
ATGGTTCAAGTTCCCGGGCATGTCTTGTTATTGGGTGCATCTCTACAAGTGAAATTGACG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400028816
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400028816 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g085150.1 |
+2 |
3e-76 |
237 |
119/139 (86%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch10 gene_region:63759473-63761440 transcript_region:SL2.50ch10:63759473..63761440- go_terms:GO:0016765 functional_description:Undecaprenyl pyrophosphate synthase (AHRD V1 ***- D8G636_9CYAN); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like |
| TAIR PP10 |
AT5G58770.1 |
+2 |
2e-55 |
183 |
89/131 (68%) |
Undecaprenyl pyrophosphate synthetase family protein | chr5:23734396-23735495 FORWARD LENGTH=310 |
Transcript Sequence (751 bp)
>PGSC0003DMT400028816 751 pgsc_dm_v3.4
TGCTTTATTGGATTTCTACAGAGCAGGGATTCGAATATCTATAATTGGAGACTCCAGTAA
GCTCCCCAAGTCATTGCAGGACTTGATAGATAAAGCGGTAATGACTACTAAAGCAAACTC
CCGACTTCACCTCATTGTTGCAGTAAACTATAGTGGACAGCATGATGTTGTACAAGCTTG
TCAAACCATTGCTCAAAAAGTTAAGGATGGCAATATCGAACCCGAAGACATTAATAGTTT
CCTAGTAGAACAGGAATTACAAACAAAATGTACTGAATTTCCAAGTCCTGATTTACTTAT
AAGGACTAGTGGGGAGTTTAGACTTAGCAATTTCTTACTCTGGCAGTTGGCCTATACTGA
ACTCTTCTTTTCTCATTCACAATGGCCTGATTTTGGTGAAGCTGAGTTTTTAGAGGCTTT
ATCTTCTTTTCAGCAAAGACAGAGGCGCTATGGTGGACAGAGTTCCTAGCATCATGCTAT
GTGAAACAAGTTCGGAGTATGTTACAGAATGTATATAGACATTATTCATAGTAATACACA
TAGTTATATTTAGGTAAGGGCGTATTTAGGTGGAGGCTATGGGTTCACGTGAACGTGAAC
TCATGCTCCTTTCCCTAAACCATATATAGAAATGTATATTTATACAAATTTACTTTAGTA
TATGGGTGCATCCAAGCTCAAAGTGTCCTATATGGTTCAAGTTCCCGGGCATGTCTTGTT
ATTGGGTGCATCTCTACAAGTGAAATTGACG
